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用于物种内基因重复检测的在线资源概述。

An overview of online resources for intra-species detection of gene duplications.

作者信息

Zhang Xi, Smith David Roy

机构信息

Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, NS, Canada.

Institute for Comparative Genomics, Dalhousie University, Halifax, NS, Canada.

出版信息

Front Genet. 2022 Oct 13;13:1012788. doi: 10.3389/fgene.2022.1012788. eCollection 2022.

Abstract

Gene duplication plays an important role in evolutionary mechanism, which can act as a new source of genetic material in genome evolution. However, detecting duplicate genes from genomic data can be challenging. Various bioinformatics resources have been developed to identify duplicate genes from single and/or multiple species. Here, we summarize the metrics used to measure sequence identity among gene duplicates within species, compare several computational approaches that have been used to predict gene duplicates, and review recent advancements of a Basic Local Alignment Search Tool (BLAST)-based web tool and database, allowing future researchers to easily identify intra-species gene duplications. This article is a quick reference guide for research tools used for detecting gene duplicates.

摘要

基因复制在进化机制中起着重要作用,它可以作为基因组进化中遗传物质的新来源。然而,从基因组数据中检测重复基因可能具有挑战性。已经开发了各种生物信息学资源来从单个和/或多个物种中识别重复基因。在这里,我们总结了用于衡量物种内基因重复序列之间序列同一性的指标,比较了几种用于预测基因重复的计算方法,并回顾了基于基本局部比对搜索工具(BLAST)的网络工具和数据库的最新进展,以便未来的研究人员能够轻松识别物种内的基因复制。本文是用于检测基因重复的研究工具的快速参考指南。

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