Wan Guihong, Nguyen Nga, Liu Feng, DeSimone Mia S, Leung Bonnie W, Rajeh Ahmad, Collier Michael R, Choi Min Seok, Amadife Munachimso, Tang Kimberly, Zhang Shijia, Phillipps Jordan S, Jairath Ruple, Alexander Nora A, Hua Yining, Jiao Meng, Chen Wenxin, Ho Diane, Duey Stacey, Németh István Balázs, Marko-Varga Gyorgy, Valdés Jeovanis Gil, Liu David, Boland Genevieve M, Gusev Alexander, Sorger Peter K, Yu Kun-Hsing, Semenov Yevgeniy R
Department of Dermatology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.
NPJ Precis Oncol. 2022 Oct 31;6(1):79. doi: 10.1038/s41698-022-00321-4.
Prognostic analysis for early-stage (stage I/II) melanomas is of paramount importance for customized surveillance and treatment plans. Since immune checkpoint inhibitors have recently been approved for stage IIB and IIC melanomas, prognostic tools to identify patients at high risk of recurrence have become even more critical. This study aims to assess the effectiveness of machine-learning algorithms in predicting melanoma recurrence using clinical and histopathologic features from Electronic Health Records (EHRs). We collected 1720 early-stage melanomas: 1172 from the Mass General Brigham healthcare system (MGB) and 548 from the Dana-Farber Cancer Institute (DFCI). We extracted 36 clinicopathologic features and used them to predict the recurrence risk with supervised machine-learning algorithms. Models were evaluated internally and externally: (1) five-fold cross-validation of the MGB cohort; (2) the MGB cohort for training and the DFCI cohort for testing independently. In the internal and external validations, respectively, we achieved a recurrence classification performance of AUC: 0.845 and 0.812, and a time-to-event prediction performance of time-dependent AUC: 0.853 and 0.820. Breslow tumor thickness and mitotic rate were identified as the most predictive features. Our results suggest that machine-learning algorithms can extract predictive signals from clinicopathologic features for early-stage melanoma recurrence prediction, which will enable the identification of patients that may benefit from adjuvant immunotherapy.
早期(I/II期)黑色素瘤的预后分析对于定制监测和治疗方案至关重要。由于免疫检查点抑制剂最近已被批准用于IIB期和IIC期黑色素瘤,因此识别复发高风险患者的预后工具变得更加关键。本研究旨在评估机器学习算法利用电子健康记录(EHR)中的临床和组织病理学特征预测黑色素瘤复发的有效性。我们收集了1720例早期黑色素瘤:1172例来自麻省总医院布莱根医疗系统(MGB),548例来自丹娜法伯癌症研究所(DFCI)。我们提取了36个临床病理特征,并使用监督机器学习算法来预测复发风险。对模型进行了内部和外部评估:(1)对MGB队列进行五折交叉验证;(2)独立使用MGB队列进行训练,DFCI队列进行测试。在内部和外部验证中,我们分别实现了AUC的复发分类性能:0.845和0.812,以及时间依赖性AUC的事件发生时间预测性能:0.853和0.820。Breslow肿瘤厚度和有丝分裂率被确定为最具预测性的特征。我们的结果表明,机器学习算法可以从临床病理特征中提取预测信号,用于早期黑色素瘤复发预测,这将有助于识别可能从辅助免疫治疗中获益的患者。