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内生 Bosea spartocytisi sp. nov. 与根瘤菌一起存在于生长在泰德国家公园(加那利群岛)土壤中的 Spartocytisus supranubius 的根瘤中。

Endophytic Bosea spartocytisi sp. nov. Coexists with rhizobia in root nodules of Spartocytisus supranubius growing in soils of Teide National Park (Canary Islands).

机构信息

Departamento de Bioquímica, Microbiología, Biología Celular y Genética, Universidad de La Laguna, Tenerife, Spain.

CICS-UBI-Health Sciences Research Centre, University of Beira Interior, Covilhã, Portugal.

出版信息

Syst Appl Microbiol. 2022 Nov;45(6):126374. doi: 10.1016/j.syapm.2022.126374. Epub 2022 Oct 21.

DOI:10.1016/j.syapm.2022.126374
PMID:36335886
Abstract

Two rod-shaped Gram negative strains, SSUT16 and SSUT22, were isolated from root nodules of Spartocytisus supranubius in soils of the Teide National Park (Tenerife, Spain). The 16S rRNA gene sequences of these two novel strains classified them within genus Bosea with similarity values ranging from 97.65 % to 99.54 % with respect to the other species of this genus. The MLSA analysis from a concatenation of the two housekeeping- genes, recA and gyrB, showed that Bosea thiooxidans LMG 26210 and B. robiniae LMG 26381 are the two closest relative species with which they share similarity sequences values of 94.42 % and 94.27 %, respectively. The genome sequence analysis of strain SSUT16 showed average nucleotide identity percentages (ANIb) and digital DNA-DNA hybridization (dDDH) below 84 % and 33 %, respectively, with the type strains of all sequenced species of genus Bosea. These values are much lower than the currently accepted cut-off values for these two parameters to delineate bacterial species, confirming that the novel strains constitute a novel Bosea species. In addition, they are also distinguished from the other closest species in their fatty acid composition and in other phenotypic characteristics. Genome sequence analysis showed the absence of the common nodulation and nitrogen fixation genes in the novel strains. Therefore, based on the results of phylogenetic, genomic, chemotaxonomic and phenotypic characterization, we propose a new species named Bosea spartocytisi sp. nov., with type strain SSUT16 (=LMG 32510 = CECT 30526 = HAMBI 3759).

摘要

两株棒状革兰氏阴性菌株,SSUT16 和 SSUT22,从特内里费岛泰德国家公园(西班牙)土壤中的 Spartocytisus supranubius 根瘤中分离得到。这两个新菌株的 16S rRNA 基因序列将它们归类于 Bosea 属,与该属的其他种之间的相似性值范围为 97.65%至 99.54%。两个管家基因 recA 和 gyrB 的 MLSA 分析表明,Bosea thiooxidans LMG 26210 和 B. robiniae LMG 26381 是与它们最接近的两个相关物种,它们的相似性序列值分别为 94.42%和 94.27%。菌株 SSUT16 的基因组序列分析表明,与所有已测序的 Bosea 属种的模式菌株相比,平均核苷酸同一性百分比(ANIb)和数字 DNA-DNA 杂交(dDDH)分别低于 84%和 33%。这些值远低于这两个参数来划定细菌种的目前接受的截止值,证实新菌株构成了一个新的 Bosea 种。此外,它们在脂肪酸组成和其他表型特征方面也与其他最接近的物种区分开来。基因组序列分析表明,新菌株中缺乏常见的结瘤和固氮基因。因此,基于系统发育、基因组、化学分类学和表型特征的研究结果,我们提出了一个新的 Bosea 种,命名为 Bosea spartocytisi sp. nov.,其模式菌株为 SSUT16(=LMG 32510=CECT 30526=HAMBI 3759)。

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