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一种新型温和噬菌体对抗金黄色葡萄球菌 (vB_SarS_BM31) 的特性。

Characteristics of a novel temperate bacteriophage against Staphylococcus arlettae (vB_SarS_BM31).

机构信息

College of Veterinary Medicine, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.

Key Laboratory of Animal Disease and Human Health of Sichuan Province, Chengdu, 611130, Sichuan, China.

出版信息

Int Microbiol. 2023 May;26(2):327-341. doi: 10.1007/s10123-022-00292-3. Epub 2022 Nov 7.

Abstract

BACKGROUND

Staphylococcus arlettae is a rarely reported coagulase-negative staphylococcus (CoNS) isolated from infected humans and livestock. Observing phage-bacteria interaction could improve the understanding of bacterial pathogenetic mechanisms, providing foundational evidence for phage therapy or phage detection. Herein, we aimed to characterise and annotate a novel bacteriophage, vB_SarS_BM31 (BM31), specific to S. arlettae. This bacteriophage was isolated from a milk sample associated with bovine mastitis and collected in the Sichuan Province, China.

RESULTS

The BM31 genome comprised a linear double-stranded DNA of 42,271 base pair in length with a G + C content of 34.59%. A total of 65 open reading frames (ORFs) were assembled from phage DNA, of which 29 were functionally annotated. These functional genes were divided into four modules: the structural, DNA packing and replication, lysis, and lysogeny modules. Holin (ORF25), lysin (ORF26), and integrase (ORF28) were located closely in the entire BM31 genome and were important for lyse or lysogeny cycle of BM31. The phage was identified as a temperate phage according to whole genome analysis and life cycle assay, with basic biological characteristics such as small burst size, short latency period, and narrow host range, consistent with the characteristics of the family Siphoviridae, subcluster B14 of the Staphylococcus bacteriophage.

CONCLUSIONS

The present isolation and characterisation of BM31 contributes to the Staphylococcus bacteriophage database and provides a theoretical foundation for its potential applications. To the best of our knowledge, BM31 is the only shared and completely reported phage against S. arlettae in the entire public database.

摘要

背景

葡萄球菌(Staphylococcus arlettae)是一种罕见的凝固酶阴性葡萄球菌(CoNS),从感染人类和家畜的样本中分离得到。观察噬菌体-细菌相互作用可以提高对细菌致病机制的理解,为噬菌体治疗或噬菌体检测提供基础证据。在此,我们旨在描述和注释一种针对葡萄球菌(Staphylococcus arlettae)的新型噬菌体 vB_SarS_BM31(BM31)。该噬菌体从中国四川省的一份与牛乳腺炎相关的牛奶样本中分离得到。

结果

BM31 基因组由一条 42271 碱基对的线性双链 DNA 组成,GC 含量为 34.59%。从噬菌体 DNA 中组装了 65 个开放阅读框(ORF),其中 29 个功能得到注释。这些功能基因分为四个模块:结构模块、DNA 包装和复制模块、裂解模块和溶原模块。BM31 基因组中紧密排列着孔蛋白(ORF25)、溶菌酶(ORF26)和整合酶(ORF28),这三个基因对 BM31 的裂解或溶原周期非常重要。根据全基因组分析和生命周期测定,该噬菌体被鉴定为温和噬菌体,具有小爆发量、短潜伏期和窄宿主范围等基本生物学特性,与 Siphoviridae 科、葡萄球菌噬菌体亚群 B14 的特征一致。

结论

BM31 的分离和鉴定丰富了葡萄球菌噬菌体数据库,为其潜在应用提供了理论基础。据我们所知,BM31 是整个公共数据库中针对葡萄球菌(Staphylococcus arlettae)的唯一共享且完全报道的噬菌体。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5461/9638216/a2c971afa044/10123_2022_292_Fig1_HTML.jpg

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