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淡水神仙鱼的首次全基因组测序与从头组装

First Ever Whole Genome Sequencing and De Novo Assembly of the Freshwater Angelfish, .

作者信息

Madireddy Indeever

机构信息

BioCurious, Santa Clara, CA, USA.

BASIS Independent Silicon Valley, San Jose, CA, USA.

出版信息

MicroPubl Biol. 2022 Oct 18;2022. doi: 10.17912/micropub.biology.000654. eCollection 2022.

Abstract

This research work is the first to ever sequence and perform a de novo assembly of the genome of the freshwater angelfish, . The final genome assembly consisted of 15,486 contigs and was 734.79 Mb in size with an 86.5% BUSCO score. Functional annotation of the genome revealed 24,247 protein-coding sequences related to other fish species. 14,329 (59%) of the identified genes were orthologous to , a closely related South American cichlid.

摘要

这项研究工作首次对淡水神仙鱼的基因组进行了测序和从头组装。最终的基因组组装由15486个重叠群组成,大小为734.79 Mb,BUSCO评分为86.5%。基因组的功能注释揭示了24247个与其他鱼类物种相关的蛋白质编码序列。在鉴定出的基因中,有14329个(59%)与一种亲缘关系密切的南美丽鱼科鱼直系同源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee4d/9627325/9b97112ec1c7/25789430-2022-micropub.biology.000654.jpg

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