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根系对聚乙二醇-6000诱导的干旱胁迫的转录组反应

Transcriptomic responses of roots in response to polyethylene glycol - 6000 stimulated drought stress.

作者信息

Wu Kai-Chao, Huang Cheng-Mei, Verma Krishan K, Deng Zhi-Nian, Huang Hai-Rong, Pang Tian, Cao Hui-Qing, Luo Hai-Bin, Jiang Sheng-Li, Xu Lin

机构信息

Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, China.

Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture and Rural Area, Nanning, China.

出版信息

Front Plant Sci. 2022 Oct 24;13:992755. doi: 10.3389/fpls.2022.992755. eCollection 2022.

DOI:10.3389/fpls.2022.992755
PMID:36352884
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9638123/
Abstract

Drought is the abiotic factor that adversely affects plant growth, development survival, and crop productivity, posing a substantial threat to sustainable agriculture worldwide, especially in warm and dry areas. However, the extent of damage depends upon the crop growth stage, severity and frequency of the stress. In general, the reproductive growth phase is more sensitive to stresses causing a substantial loss in crop productivity.  (L.) is the most variable wild relative of sugarcane with potential for use in sugarcane crop improvement programs. In the present study addresses the transcriptomic analysis of drought stress imposed by polyethylene glycol-6000 (PED-6000; w/v- 25%) on the root tip tissues of GX83-10. The analysis of microarrays of drought-stressed roots was performed at 0 (CK), 2 (T), 4 (T), 8 (T) and 24 h (T). The analyzed data were compared with the gene function annotations of four major databases, such as Nr, KOG/COG, Swiss-Prot, and KEGG, and a total of 62,988 single-gene information was obtained. The differently expressed genes of 56237 (T), 59319 (T), and 58583 (T), among which CK obtained the most significant number of expressed genes (35920) as compared to T, with a total of 53683 trend genes. Gene ontology (GO) and KEGG analysis were performed on the 6 important trends, and a total of 598 significant GO IDs and 42 significantly enriched metabolic pathways. Furthermore, these findings also aid in the selection of novel genes and promoters that can be used to potentially produce crop plants with enhanced stress resistance efficiency for sustainable agriculture.

摘要

干旱是一种非生物因素,会对植物的生长、发育、存活及作物生产力产生不利影响,对全球可持续农业构成重大威胁,在温暖干燥地区尤为如此。然而,损害程度取决于作物生长阶段、胁迫的严重程度和频率。一般来说,生殖生长阶段对胁迫更为敏感,会导致作物生产力大幅下降。(L.)是甘蔗最具变异性的野生近缘种,具有用于甘蔗作物改良计划的潜力。在本研究中,对聚乙二醇 - 6000(PEG - 6000;w/v - 25%)对GX83 - 10根尖组织施加的干旱胁迫进行了转录组分析。在0(CK)、2(T)、4(T)、8(T)和24小时(T)对干旱胁迫根系的微阵列进行了分析。将分析数据与Nr、KOG/COG、Swiss - Prot和KEGG这四个主要数据库的基因功能注释进行比较,共获得62988条单基因信息。56237(T)、59319(T)和58583(T)中有差异表达的基因,其中与T相比,CK获得的表达基因数量最多(35920个),共有53683个趋势基因。对6个重要趋势进行了基因本体论(GO)和KEGG分析,共有598个显著的GO ID和42条显著富集的代谢途径。此外,这些发现还有助于选择新的基因和启动子,可用于培育具有更高抗逆效率的作物,以实现可持续农业。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1821/9638123/1c2b551dabda/fpls-13-992755-g013.jpg
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Gene Co-Expression Analysis Reveals Transcriptome Divergence between Wild and Cultivated Sugarcane under Drought Stress.基因共表达分析揭示了干旱胁迫下野生和栽培甘蔗之间的转录组差异。
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Functional relationship between photosynthetic leaf gas exchange in response to silicon application and water stress mitigation in sugarcane.
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PEG 6000-Stimulated Drought Stress Improves the Attributes of In Vitro Growth, Steviol Glycosides Production, and Antioxidant Activities in Bertoni.聚乙二醇6000引发的干旱胁迫改善了甜叶菊的离体生长特性、甜菊糖苷产量及抗氧化活性。
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