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预测宫颈癌患者中与脂肪酸代谢相关的五个特征的免疫和预后价值。

Prediction of the immunological and prognostic value of five signatures related to fatty acid metabolism in patients with cervical cancer.

作者信息

Zeng Qiongjing, Jiang Huici, Lu Fang, Fu Mingxu, Bi Yingying, Zhou Zengding, Cheng Jiajing, Qin Jinlong

机构信息

Department of Obstetrics and Gynecology, Shanghai Fourth People's Hospital, School of Medicine, Tongji University, Shanghai, China.

Department of Burn Surgery, Ruijin Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China.

出版信息

Front Oncol. 2022 Nov 3;12:1003222. doi: 10.3389/fonc.2022.1003222. eCollection 2022.

Abstract

A growing attention has been attached to the role of fatty acid metabolism (FAM) in the development of cancer, and cervical cancer (CC) is still the primary cause of cancer-associated death in women worldwide. Therefore, it is imperative to explore the possible prognostic significance of FAM in CC. In this study, CC samples and corresponding normal samples were acquired from the Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression (GTEx). Single sample gene set enrichment analysis (ssGSEA) was conducted for calculating FAM-related scores (FAMRs) to screen FAM-related genes (FAMRGs). Two subtypes related to FAM were identified by consistent clustering. Among them, subtype C2 had a poor prognosis, and C1 had a high level of immune cell infiltration, while C2 had a high possibility of immune escape and was insensitive to chemotherapy drugs. Based on the differentially expressed genes (DEGs) in the two subtypes, a 5-gene signature (PLCB4, FBLN5, TSPAN8, CST6, and SERPINB7) was generated by the least absolute shrinkage and selection operator (LASSO) and Akaike information criterion (AIC). The model demonstrated a high prognostic accuracy (area under the curve (AUC)>0.7) in multiple cohorts and was one independent prognostic factor for CC patients. Accordingly, FAMRGs can be adopted as a biomarker for the prediction of CC patients' prognosis and help guide the immunotherapy of CC.

摘要

脂肪酸代谢(FAM)在癌症发展中的作用已受到越来越多的关注,而宫颈癌(CC)仍是全球女性癌症相关死亡的主要原因。因此,探索FAM在CC中可能的预后意义势在必行。在本研究中,从癌症基因组图谱(TCGA)和基因型-组织表达(GTEx)获取CC样本及相应的正常样本。进行单样本基因集富集分析(ssGSEA)以计算FAM相关评分(FAMRs),从而筛选FAM相关基因(FAMRGs)。通过一致性聚类鉴定出与FAM相关的两个亚型。其中,C2亚型预后较差,C1亚型免疫细胞浸润水平较高,而C2亚型免疫逃逸可能性高且对化疗药物不敏感。基于两个亚型中的差异表达基因(DEGs),通过最小绝对收缩和选择算子(LASSO)及赤池信息准则(AIC)生成了一个5基因特征(PLCB4、FBLN5、TSPAN8、CST6和SERPINB7)。该模型在多个队列中显示出较高的预后准确性(曲线下面积(AUC)>0.7),并且是CC患者的一个独立预后因素。因此,FAMRGs可作为预测CC患者预后的生物标志物,并有助于指导CC的免疫治疗。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/53d2/9671136/ecf631b519b6/fonc-12-1003222-g001.jpg

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