Qian Xi-Feng, Zhang Jia-Hao, Mai Yue-Xue, Yin Xin, Zheng Yu-Bin, Yu Zi-Yuan, Zhu Guo-Dong, Guo Xu-Guang
Department of Clinical Laboratory Medicine, The Third Affiliated Hospital of Guangzhou Medical University, Guangzhou 510150, China.
Department of Clinical Medicine, The Sixth Clinical School of Guangzhou Medical University, Guangzhou 511436, China.
Int J Genomics. 2022 Nov 14;2022:6465760. doi: 10.1155/2022/6465760. eCollection 2022.
Lower-grade gliomas (LGG) are the most common intracranial malignancies that readily evolve to high-grade gliomas and increase drug resistance. Paraptosis is defined as a nonapoptotic form of programmed cell death, which is gradually focused on patients with gliomas to develop treatment options. However, the specific role of paraptosis in LGG and its correlation is still vague. In this study, we first establish the novel paraptosis-based prognostic model for LGG patients. The relevant data of LGG patients were acquired from The Cancer Genome Atlas database, and we found that LGG patients could be divided into three different clusters based on paraptosis via consensus cluster analysis. Through least absolute shrinkage and selection operator regression analysis and multivariate Cox regression analysis, 10-paraptosis-related gene (PRG) signatures (CDK4, TNK2, DSTYK, CDKN3, CCR4, CASP9, HSPA5, RGR, LPAR1, and PDCD6IP) were identified to separate LGG patients into high- and low-risk subgroups successfully. The Kaplan-Meier analysis and time-dependent receiver-operating characteristic showed that the performances of predicting overall survival (OS) were dramatically high. The parallel results were reappeared and verified by using the Chinese Glioma Genome Atlas and Gene Expression Omnibus databases. Independent prognostic analysis and nomogram construction implied that risk scores could be considered the independent factor to predict OS. Enrichment analysis indicated that immune-related biological processes were generally enriched, and different immune statuses were highly infiltrated in high-risk group. We also confirmed the potential relationship of 10-PRG signatures and drug sensitivity of Food and Drug Administration-approved drugs. In summary, our findings provide a novel knowledge of paraptosis status and crucial direction to further explore the role of PRG signatures in LGG.
低级别胶质瘤(LGG)是最常见的颅内恶性肿瘤,容易发展为高级别胶质瘤并增加耐药性。副凋亡被定义为一种非凋亡形式的程序性细胞死亡,它逐渐成为胶质瘤患者开发治疗方案的关注焦点。然而,副凋亡在LGG中的具体作用及其相关性仍不明确。在本研究中,我们首先为LGG患者建立了基于副凋亡的新型预后模型。LGG患者的相关数据从癌症基因组图谱数据库中获取,我们发现通过一致性聚类分析,LGG患者可根据副凋亡分为三个不同的聚类。通过最小绝对收缩和选择算子回归分析以及多变量Cox回归分析,确定了10个与副凋亡相关的基因(PRG)特征(CDK4、TNK2、DSTYK、CDKN3、CCR4、CASP9、HSPA5、RGR、LPAR1和PDCD6IP),成功地将LGG患者分为高风险和低风险亚组。Kaplan-Meier分析和时间依赖性受试者工作特征曲线显示,预测总生存期(OS)的性能非常高。使用中国胶质瘤基因组图谱和基因表达综合数据库再现并验证了平行结果。独立预后分析和列线图构建表明,风险评分可被视为预测OS的独立因素。富集分析表明,免疫相关的生物学过程普遍富集,高风险组中不同的免疫状态高度浸润。我们还证实了10个PRG特征与美国食品药品监督管理局批准药物的药物敏感性之间的潜在关系。总之,我们的研究结果提供了关于副凋亡状态的新知识,并为进一步探索PRG特征在LGG中的作用提供了关键方向。