Department of Biotechnology, National Institute of Technology Warangal, Warangal, 506004, Telangana, India.
Appl Biochem Biotechnol. 2023 May;195(5):2917-2932. doi: 10.1007/s12010-022-04244-5. Epub 2022 Nov 29.
This study aims to explore key prognostic and diagnostic biomarkers involved in the pathogenesis of papillary thyroid cancer (PTC) which is one of the most common endocrine cancers and whose occurrence is rapidly increasing. Papillary thyroid cancer datasets containing normal and tumor samples were collected from Gene Expression Omnibus. Protein-protein interaction (PPI) network for common upregulated differentially expressed genes (DEGs) was constructed, and hub genes were studied. Gene ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis were performed to identify the vital biological behaviors and pathways involved in PTC. PPI network analysis demonstrated the interaction between 134 common upregulated DEGs, and top 15 pivotal genes with highest degree of connectivity were retrieved. Three of the hub genes (DPP4, ITGA2, FN1) were linked to the prognosis of PTC patients and considered clinically relevant core genes via survival analysis. We suggest that the identification of key genes associated with PTC development help us in understanding molecular mechanisms related to disease. These genes could also be considered the diagnostic biomarkers or as therapeutic targets in the future treatment for PTC.
本研究旨在探讨参与甲状腺乳头状癌(PTC)发病机制的关键预后和诊断生物标志物,PTC 是最常见的内分泌癌之一,其发病率正在迅速增加。从基因表达综合数据库中收集了包含正常和肿瘤样本的甲状腺乳头状癌数据集。构建了常见上调差异表达基因(DEGs)的蛋白质-蛋白质相互作用(PPI)网络,并研究了枢纽基因。进行了基因本体论和京都基因与基因组百科全书通路富集分析,以确定 PTC 涉及的重要生物学行为和途径。PPI 网络分析表明,134 个常见上调的 DEGs 之间存在相互作用,并且检索到连接度最高的前 15 个关键基因。通过生存分析,其中 3 个枢纽基因(DPP4、ITGA2、FN1)与 PTC 患者的预后相关,被认为是具有临床意义的核心基因。我们认为,鉴定与 PTC 发生发展相关的关键基因有助于我们了解与疾病相关的分子机制。这些基因也可以被视为未来 PTC 治疗的诊断生物标志物或治疗靶点。