Xu Shanshan, Li Youran, Huang Hua, Miao Xian, Gu Yunfei
Major of Chinese Medicine Surgery, Nanjing University of Chinese Medicine, Nanjing, Jiangsu 210000, China.
Department of Colorectal Surgery, Affiliated Hospital of Nanjing University of Chinese Medicine, Nanjing, Jiangsu 210000, China.
J Oncol. 2022 Nov 21;2022:7905787. doi: 10.1155/2022/7905787. eCollection 2022.
This study is aimed at exploring the function of KIF21B in colorectal cancer.
The expression of KIF21B was analyzed by the UALCAN database, GEPIA site, and TIMER site. The survival rate was analyzed by Kaplan-Meier curves, and the prognosis was analyzed by ROC. Relevant signaling pathways and biological processes were analyzed by GO-KEGG enrichment analysis. The correlation between KIF21B and cancer immune infiltrates was analyzed by TIMER. The functional state of KIF21B in various types of cancers was conducted by single-cell RNA-sequencing. Furthermore, the expression of KIF21B was verified by real-time qPCR and Western blotting. The cell proliferation was measured by CCK8 assay. The cell apoptosis was analyzed by flow cytometry. Cell migration and invasion were determined by the transwell assay.
Combination analysis of bioinformatics methods revealed that KIF21B is high expression in CRC, associated with poor survival. KIF21B and associated genes were significantly enriched in covalent chromatin modification. The expression of KIF21B was positively correlated with infiltrating levels of CD4+ T cells and neutrophils, cell apoptosis, and metastasis. KIF21B was upregulated expression in CRC cell lines. KIF21B deficiency reduced cell proliferation, migration, and invasion.
Our study suggested that KIF21B may be a biomarker in CRC.
本研究旨在探讨KIF21B在结直肠癌中的作用。
通过UALCAN数据库、GEPIA网站和TIMER网站分析KIF21B的表达。采用Kaplan-Meier曲线分析生存率,通过ROC分析预后。通过GO-KEGG富集分析相关信号通路和生物学过程。利用TIMER分析KIF21B与癌症免疫浸润之间的相关性。通过单细胞RNA测序研究KIF21B在各种癌症中的功能状态。此外,通过实时定量PCR和蛋白质免疫印迹法验证KIF21B的表达。采用CCK8法检测细胞增殖。通过流式细胞术分析细胞凋亡。采用Transwell实验检测细胞迁移和侵袭能力。
生物信息学方法的联合分析显示,KIF21B在结直肠癌中高表达,与不良预后相关。KIF21B及其相关基因在共价染色质修饰中显著富集。KIF21B的表达与CD4+T细胞和中性粒细胞的浸润水平、细胞凋亡和转移呈正相关。KIF21B在结直肠癌细胞系中表达上调。KIF21B缺陷降低了细胞增殖、迁移和侵袭能力。
我们的研究表明,KIF21B可能是结直肠癌的一个生物标志物。