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荞麦 ATG 基因家族成员的全基因组鉴定及其在胁迫响应中的表达。

Genome-Wide Identification of ATG Gene Family Members in Fagopyrum tataricum and Their Expression during Stress Responses.

机构信息

College of Life Science, Sichuan Agricultural University, No. 46, Xinkang Road, Ya'an 625014, China.

State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, No. 211, Huimin Road, Wenjiang District, Chengdu 611130, China.

出版信息

Int J Mol Sci. 2022 Nov 27;23(23):14845. doi: 10.3390/ijms232314845.

Abstract

Abiotic stresses such as drought and salinity are major environmental factors limiting plant productivity. Autophagy-related genes are extensively involved in plant growth, development, and adverse stress responses, which have not yet been characterized in Tartary buckwheat (Fagopyrum tataricum, TB). In this study, we verified that drought stress could induce autophagy in TB roots. Next, 49 FtATGs in the whole genome of TB were identified. All FtATGs were randomly distributed in 8 known chromosomes, while 11 FtATGs were predictably segmental repeats. As the core component of autophagy, there were 8 FtATG8s with similar gene structures in TB, while FtATG8s showed high expression at the transcription level under drought and salt stresses. The cis-acting element analysis identified that all FtATG8 promoters contain light-responsive and MYB-binding elements. FtATG8s showed a cell-wide protein interaction network and strongly correlated with distinct stress-associated transcription factors. Furthermore, overexpression of FtATG8a and FtATG8f enhanced the antioxidant enzyme activities of TB under adverse stresses. Remarkably, FtATG8a and FtATG8f may be vital candidates functioning in stress resistance in TB. This study prominently aids in understanding the biological role of FtATG genes in TB.

摘要

非生物胁迫,如干旱和盐胁迫,是限制植物生产力的主要环境因素。自噬相关基因广泛参与植物的生长、发育和逆境响应,但在苦荞(Fagopyrum tataricum,TB)中尚未得到描述。在本研究中,我们验证了干旱胁迫可以诱导 TB 根中的自噬。接下来,在 TB 的全基因组中鉴定了 49 个 FtATGs。所有 FtATGs 随机分布在 8 条已知的染色体上,而 11 个 FtATGs 可预测性地为片段重复。作为自噬的核心成分,有 8 个 FtATG8s 在 TB 中具有相似的基因结构,而 FtATG8s 在干旱和盐胁迫下的转录水平上表现出高表达。顺式作用元件分析表明,所有 FtATG8 启动子都含有光响应和 MYB 结合元件。FtATG8s 表现出广泛的细胞蛋白相互作用网络,并与不同的应激相关转录因子强烈相关。此外,过表达 FtATG8a 和 FtATG8f 可增强 TB 在逆境下的抗氧化酶活性。值得注意的是,FtATG8a 和 FtATG8f 可能是 TB 中在应激抗性中起关键作用的候选基因。本研究显著有助于理解 FtATG 基因在 TB 中的生物学作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4de2/9739578/6bf594495964/ijms-23-14845-g001.jpg

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