Rappu Pekka, Suwal Ujjwal, Siljamäki Elina, Heino Jyrki
Department of Life Technologies and InFLAMES Research Flagship Center, University of Turku, Turku, Finland.
Front Oncol. 2022 Dec 1;12:1035188. doi: 10.3389/fonc.2022.1035188. eCollection 2022.
Protein arginine deiminases (PADs) are intracellular enzymes that may, especially in pathological conditions, also citrullinate extracellular substrates, including matrisome proteins such as structural proteins in extracellular matrix (ECM). PADs are abundantly expressed in human cancer cells. Citrullination of matrisome proteins has been reported in colon cancer but the phenomenon has never been systematically studied.
To gain a broader view of citrullination of matrisome proteins in cancer, we analyzed cancer proteomics data sets in 3 public databases for citrullinated matrisome proteins. In addition, we used three-dimensional cell cocultures of fibroblasts and cancer cells and analyzed citrullination of ECM.
Our new analysis indicate that citrullination of ECM occurs in human cancer, and there is a significant variation between tumors. Most frequently citrullinated proteins included fibrinogen and fibronectin, which are typically citrullinated in rheumatoid inflammation. We also detected correlation between immune cell marker proteins, matrix metalloproteinases and ECM citrullination, which suggests that in cancer, citrullination of matrisome proteins is predominantly an inflammation-related phenomenon. This was further supported by our analysis of three-dimensional spheroid co-cultures of nine human cancer cell lines and fibroblasts by mass spectrometry, which gave no evidence that cancer cells or fibroblasts could citrullinate matrisome proteins in tumor stroma. It also appears that in the spheroid cultures, matrisome proteins are protected from citrullination.
蛋白质精氨酸脱亚氨酶(PADs)是细胞内酶,尤其在病理条件下,也可使细胞外底物瓜氨酸化,包括基质体蛋白,如细胞外基质(ECM)中的结构蛋白。PADs在人类癌细胞中大量表达。结肠癌中已报道基质体蛋白的瓜氨酸化现象,但从未进行过系统研究。
为更全面地了解癌症中基质体蛋白的瓜氨酸化情况,我们分析了3个公共数据库中的癌症蛋白质组学数据集,以查找瓜氨酸化的基质体蛋白。此外,我们使用成纤维细胞和癌细胞的三维细胞共培养物,并分析细胞外基质的瓜氨酸化情况。
我们的新分析表明,细胞外基质的瓜氨酸化在人类癌症中存在,且肿瘤之间存在显著差异。最常被瓜氨酸化的蛋白包括纤维蛋白原和纤连蛋白,它们通常在类风湿性炎症中被瓜氨酸化。我们还检测到免疫细胞标记蛋白、基质金属蛋白酶与细胞外基质瓜氨酸化之间的相关性,这表明在癌症中,基质体蛋白的瓜氨酸化主要是一种与炎症相关的现象。我们通过质谱分析对9种人类癌细胞系和成纤维细胞的三维球体共培养物进行分析,进一步支持了这一观点,该分析没有证据表明癌细胞或成纤维细胞能够使肿瘤基质中的基质体蛋白瓜氨酸化。在球体培养物中,基质体蛋白似乎也受到保护而不被瓜氨酸化。