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血液 RNA 转录本揭示了阿尔茨海默病和其他神经退行性疾病中基本细胞过程的相似和不同改变。

Blood RNA transcripts reveal similar and differential alterations in fundamental cellular processes in Alzheimer's disease and other neurodegenerative diseases.

机构信息

ASU-Banner Neurodegenerative Disease Research Center, Arizona State University, Tempe, Arizona, USA.

University of Pennsylvania, Perelman School of Medicine, Philadelphia, Pennsylvania, USA.

出版信息

Alzheimers Dement. 2023 Jun;19(6):2618-2632. doi: 10.1002/alz.12880. Epub 2022 Dec 21.

Abstract

BACKGROUND

Dysfunctional processes in Alzheimer's disease and other neurodegenerative diseases lead to neural degeneration in the central and peripheral nervous system. Research demonstrates that neurodegeneration of any kind is a systemic disease that may even begin outside of the region vulnerable to the disease. Neurodegenerative diseases are defined by the vulnerabilities and pathology occurring in the regions affected.

METHOD

A random forest machine learning analysis on whole blood transcriptomes from six neurodegenerative diseases generated unbiased disease-classifying RNA transcripts subsequently subjected to pathway analysis.

RESULTS

We report that transcripts of the blood transcriptome selected for each of the neurodegenerative diseases represent fundamental biological cell processes including transcription regulation, degranulation, immune response, protein synthesis, apoptosis, cytoskeletal components, ubiquitylation/proteasome, and mitochondrial complexes that are also affected in the brain and reveal common themes across six neurodegenerative diseases.

CONCLUSION

Neurodegenerative diseases share common dysfunctions in fundamental cellular processes. Identifying regional vulnerabilities will reveal unique disease mechanisms.

HIGHLIGHTS

Transcriptomics offer information about dysfunctional processes. Comparing multiple diseases will expose unique malfunctions within diseases. Blood RNA can be used ante mortem to track expression changes in neurodegenerative diseases. Protocol standardization will make public datasets compatible.

摘要

背景

阿尔茨海默病和其他神经退行性疾病中的功能障碍过程导致中枢和周围神经系统的神经变性。研究表明,任何类型的神经退行性疾病都是一种全身性疾病,甚至可能从易患疾病的区域之外开始。神经退行性疾病的定义是受影响区域发生的脆弱性和病理学。

方法

对来自六种神经退行性疾病的全血转录组进行随机森林机器学习分析,生成无偏的疾病分类 RNA 转录本,随后进行途径分析。

结果

我们报告说,为每种神经退行性疾病选择的血液转录组中的转录本代表基本的生物学细胞过程,包括转录调节、脱粒、免疫反应、蛋白质合成、细胞凋亡、细胞骨架成分、泛素化/蛋白酶体和线粒体复合物,这些过程在大脑中也受到影响,并揭示了六种神经退行性疾病之间的共同主题。

结论

神经退行性疾病在基本细胞过程中存在共同的功能障碍。确定区域脆弱性将揭示独特的疾病机制。

重点

转录组学提供了关于功能障碍过程的信息。比较多种疾病将揭示疾病内部的独特故障。血液 RNA 可用于生前追踪神经退行性疾病中的表达变化。协议标准化将使公共数据集兼容。

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