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本文引用的文献

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Identifying behavioral structure from deep variational embeddings of animal motion.从动物运动的深度变分嵌入中识别行为结构。
Commun Biol. 2022 Nov 18;5(1):1267. doi: 10.1038/s42003-022-04080-7.
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The Mouse Action Recognition System (MARS) software pipeline for automated analysis of social behaviors in mice.鼠标动作识别系统(MARS)软件流水线,用于自动分析小鼠的社交行为。
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Unsupervised identification of the internal states that shape natural behavior.无监督识别塑造自然行为的内部状态。
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DeepPoseKit, a software toolkit for fast and robust animal pose estimation using deep learning.DeepPoseKit,一个使用深度学习进行快速、鲁棒的动物姿态估计的软件工具包。
Elife. 2019 Oct 1;8:e47994. doi: 10.7554/eLife.47994.
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DeepLabCut: markerless pose estimation of user-defined body parts with deep learning.DeepLabCut:基于深度学习的用户自定义身体部位无标记姿态估计。
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6
Data Programming: Creating Large Training Sets, Quickly.数据编程:快速创建大型训练集。
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Snorkel: Rapid Training Data Creation with Weak Supervision.Snorkel:通过弱监督快速创建训练数据
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Computational Analysis of Behavior.行为的计算分析。
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Mapping Sub-Second Structure in Mouse Behavior.绘制小鼠行为中的亚秒级结构
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Automated measurement of mouse social behaviors using depth sensing, video tracking, and machine learning.使用深度感应、视频跟踪和机器学习自动测量小鼠的社会行为。
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任务编程:学习数据高效行为表示。

Task Programming: Learning Data Efficient Behavior Representations.

作者信息

Sun Jennifer J, Kennedy Ann, Zhan Eric, Anderson David J, Yue Yisong, Perona Pietro

机构信息

Caltech.

Northwestern University.

出版信息

Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2021 Jun;2021:2875-2884. doi: 10.1109/cvpr46437.2021.00290. Epub 2021 Nov 2.

DOI:10.1109/cvpr46437.2021.00290
PMID:36544482
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9766046/
Abstract

Specialized domain knowledge is often necessary to accurately annotate training sets for in-depth analysis, but can be burdensome and time-consuming to acquire from domain experts. This issue arises prominently in automated behavior analysis, in which agent movements or actions of interest are detected from video tracking data. To reduce annotation effort, we present TREBA: a method to learn annotation-sample efficient trajectory embedding for behavior analysis, based on multi-task self-supervised learning. The tasks in our method can be efficiently engineered by domain experts through a process we call "task programming", which uses programs to explicitly encode structured knowledge from domain experts. Total domain expert effort can be reduced by exchanging data annotation time for the construction of a small number of programmed tasks. We evaluate this trade-off using data from behavioral neuroscience, in which specialized domain knowledge is used to identify behaviors. We present experimental results in three datasets across two domains: mice and fruit flies. Using embeddings from TREBA, we reduce annotation burden by up to a factor of 10 without compromising accuracy compared to state-of-the-art features. Our results thus suggest that task programming and self-supervision can be an effective way to reduce annotation effort for domain experts.

摘要

对于深入分析而言,准确标注训练集往往需要专业领域知识,但从领域专家那里获取这些知识既繁琐又耗时。这个问题在自动行为分析中尤为突出,在自动行为分析中,要从视频跟踪数据中检测感兴趣的智能体运动或动作。为了减少标注工作量,我们提出了TREBA:一种基于多任务自监督学习来学习用于行为分析的标注样本高效轨迹嵌入的方法。我们方法中的任务可以由领域专家通过一个我们称为“任务编程”的过程来有效设计,该过程使用程序来明确编码领域专家的结构化知识。通过用构建少量编程任务的时间来换取数据标注时间,可以减少领域专家的总体工作量。我们使用行为神经科学的数据来评估这种权衡,在行为神经科学中,专业领域知识用于识别行为。我们在两个领域的三个数据集中展示了实验结果:小鼠和果蝇。与最先进的特征相比,使用TREBA的嵌入,我们在不影响准确性的情况下将标注负担降低了多达10倍。因此,我们的结果表明,任务编程和自监督可以成为减少领域专家标注工作量的有效方法。