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转录组谱分析揭示与急性心肌梗死相关的新型基因调控特征:一种生物信息学方法。

Transcriptomic Profiling Unravels Novel Deregulated Gene Signatures Associated with Acute Myocardial Infarction: A Bioinformatics Approach.

机构信息

Department of Life Science, Sharda School of Basic Sciences and Research, Sharda University, Knowledge Park-III, Greater Noida 201310, India.

Division of Cardiology, Department of Internal Medicine, Taipei Medical University Hospital, Taipei 111031, Taiwan.

出版信息

Genes (Basel). 2022 Dec 9;13(12):2321. doi: 10.3390/genes13122321.

Abstract

Acute myocardial infarction (AMI) is a severe disease with elevated morbidity and mortality rate worldwide. This is attributed to great losses of cardiomyocytes, which can trigger the alteration of gene expression patterns. Although several attempts have been made to assess the AMI biomarkers, to date their role in rescuing myocardial injury remains unclear. Therefore, the current study investigated three independent microarray-based gene expression datasets from AMI patients (n = 85) and their age-sex-matched healthy controls (n = 70), to identify novel gene signatures that might be involved in cardioprotection. The differentially expressed genes (DEGs) were analyzed using 'GEO2R', and weighted gene correlation network analysis (WGCNA) was performed to identify biomarkers/modules. We found 91 DEGs, of which the number of upregulated and downregulated genes were 22 and 5, respectively. Specifically, we found that the deregulated genes such as ADOR-A3, BMP6, VPS8, and GPx3, may be associated with AMI. WGCNA revealed four highly preserved modules among all datasets. The 'Enrichr' unveiled the presence of miR-660 and STAT1, which is known to affect AMI severity. Conclusively, these genes and miRNA might play a crucial role the rescue of cardiomyocytes from severe damage, which could be helpful in developing appropriate therapeutic strategies for the management of AMI.

摘要

急性心肌梗死(AMI)是一种严重的疾病,在全球范围内发病率和死亡率都很高。这归因于心肌细胞的大量损失,这可能会引发基因表达模式的改变。尽管已经有几次尝试来评估 AMI 的生物标志物,但迄今为止,它们在挽救心肌损伤方面的作用仍不清楚。因此,本研究从 AMI 患者(n=85)及其年龄性别匹配的健康对照组(n=70)中,调查了三个独立的基于微阵列的基因表达数据集,以确定可能参与心脏保护的新基因特征。使用“GEO2R”分析差异表达基因(DEGs),并进行加权基因相关网络分析(WGCNA)以识别生物标志物/模块。我们发现了 91 个 DEGs,其中上调和下调基因的数量分别为 22 和 5。具体来说,我们发现 ADOR-A3、BMP6、VPS8 和 GPx3 等失调基因可能与 AMI 有关。WGCNA 显示了所有数据集之间存在四个高度保存的模块。“Enrichr”揭示了 miR-660 和 STAT1 的存在,已知它们会影响 AMI 的严重程度。总之,这些基因和 miRNA 可能在挽救严重损伤的心肌细胞方面发挥关键作用,这有助于开发针对 AMI 管理的适当治疗策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/29d0/9777571/f6999e2694b6/genes-13-02321-g001.jpg

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