Tyagi Parul, Singh Deeksha, Mathur Shivangi, Singh Ayushi, Ranjan Rajiv
Plant Molecular Biology Lab, Department of Botany, Faculty of Science, Dayalbagh Educational Institute, Agra, India.
Front Plant Sci. 2022 Dec 15;13:1030890. doi: 10.3389/fpls.2022.1030890. eCollection 2022.
Transcriptome sequencing or RNA-Sequencing is a high-resolution, sensitive and high-throughput next-generation sequencing (NGS) approach used to study non-model plants and other organisms. In other words, it is an assembly of RNA transcripts from individual or whole samples of functional and developmental stages. RNA- is a significant technique for identifying gene predictions and mining functional analysis that improves gene ontology understanding mechanisms of biological processes, molecular functions, and cellular components, but there is limited information available on this topic. Transcriptomics research on different types of plants can assist researchers to understand functional genes in better ways and regulatory processes to improve breeding selection and cultivation practices. In recent years, several advancements in RNA- technology have been made for the characterization of the transcriptomes of distinct cell types in biological tissues in an efficient manner. RNA-Seq technologies are briefly introduced and examined in terms of their scientific applications. In a nutshell, it introduces all transcriptome sequencing and analysis techniques, as well as their applications in plant biology research. This review will focus on numerous existing and forthcoming strategies for improving transcriptome sequencing technologies for functional gene mining in various plants using RNA- Seq technology, based on the principles, development, and applications.
转录组测序或RNA测序是一种用于研究非模式植物和其他生物的高分辨率、灵敏且高通量的新一代测序(NGS)方法。换句话说,它是来自功能和发育阶段的单个或整个样本的RNA转录本的集合。RNA测序是识别基因预测和挖掘功能分析的一项重要技术,有助于增进对生物过程、分子功能和细胞成分的基因本体理解机制,但关于这一主题的可用信息有限。对不同类型植物的转录组学研究可以帮助研究人员更好地理解功能基因和调控过程,从而改进育种选择和栽培实践。近年来,RNA测序技术取得了一些进展,能够有效地对生物组织中不同细胞类型的转录组进行表征。本文简要介绍并审视了RNA测序技术的科学应用。简而言之,它介绍了所有转录组测序和分析技术,以及它们在植物生物学研究中的应用。本综述将基于原理、发展和应用,重点关注众多现有和即将出现的策略,这些策略旨在利用RNA测序技术改进各种植物功能基因挖掘的转录组测序技术。