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生物分子凝聚物在拥挤环境中调节酶活性:液-液相分离与酶促转化的同步

Biomolecular Condensates Regulate Enzymatic Activity under a Crowded Milieu: Synchronization of Liquid-Liquid Phase Separation and Enzymatic Transformation.

作者信息

Saini Bhawna, Mukherjee Tushar Kanti

机构信息

Department of Chemistry, Indian Institute of Technology Indore, Simrol, Indore453552Madhya Pradesh, India.

出版信息

J Phys Chem B. 2023 Jan 12;127(1):180-193. doi: 10.1021/acs.jpcb.2c07684. Epub 2023 Jan 3.

Abstract

Cellular crowding plays a key role in regulating the enzymatic reactivity in physiological conditions, which is challenging to realize in the dilute phase. Enzymes drive a wide range of complex metabolic reactions with high efficiency and selectivity under extremely heterogeneous and crowded cellular environments. However, the molecular interpretation behind the enhanced enzymatic reactivity under a crowded milieu is poorly understood. Herein, using the horseradish peroxidase (HRP) and glucose oxidase (GOx) cascade pair, we demonstrate for the first time that macromolecular crowding induces liquid-liquid phase separation (LLPS) via the formation of liquid-like condensates/droplets and thereby increases the intrinsic catalytic efficiencies of HRP and GOx. Both these enzymes undergo crowding induced homotypic LLPS via enthalpically driven multivalent electrostatic as well as hydrophobic interactions. Using a set of kinetic and microscopic experiments, we show that precise synchronization of spontaneous LLPS and enzymatic transformations is key to realize the enhanced enzymatic activity under the crowded environments. Our findings reveal an unprecedented enhancement (91- to 205-fold) in the catalytic efficiency (/) of HRP at pH 4.0 within the droplet phase relative to that in the bulk aqueous phase in the presence of different crowders. In addition, we have shown that other enzymes also undergo spontaneous LLPS under macromolecular crowding, signifying the generality of this phenomenon under the crowded environments. More importantly, coalescence driven highly regulated GOx/HRP cascade reactions within the fused droplets have been demonstrated with enhanced activity and specificity under the crowded environments. The present discovery highlights the active role of membraneless condensates in regulating the enzymatic efficacy for complex metabolic reactions under the crowded cellular environments and may find significant importance in the field of biocatalysis.

摘要

细胞拥挤在生理条件下调节酶活性方面起着关键作用,而在稀溶液相中难以实现这一点。在极端异质和拥挤的细胞环境中,酶能高效且选择性地驱动各种复杂的代谢反应。然而,对于在拥挤环境下酶活性增强背后的分子解释却知之甚少。在此,我们使用辣根过氧化物酶(HRP)和葡萄糖氧化酶(GOx)级联对,首次证明大分子拥挤通过形成类液凝聚物/液滴诱导液-液相分离(LLPS),从而提高了HRP和GOx的内在催化效率。这两种酶都通过焓驱动的多价静电以及疏水相互作用经历拥挤诱导的同型LLPS。通过一系列动力学和显微镜实验,我们表明自发LLPS与酶促转化的精确同步是在拥挤环境下实现增强酶活性的关键。我们的研究结果揭示,在存在不同拥挤剂的情况下,相对于本体水相,液滴相中pH 4.0时HRP的催化效率(/)有前所未有的提高(91至205倍)。此外,我们还表明其他酶在大分子拥挤下也会发生自发LLPS,这表明这种现象在拥挤环境中具有普遍性。更重要的是,已证明在拥挤环境下,融合液滴内聚结驱动的高度调控的GOx/HRP级联反应具有增强的活性和特异性。本发现突出了无膜凝聚物在拥挤细胞环境下调节复杂代谢反应酶效能方面的积极作用,并且可能在生物催化领域具有重要意义。

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