• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于机器学习的缺血性卒中免疫原性细胞死亡相关基因分类模式识别及免疫浸润特征分析

Identification of immunogenic cell death-related gene classification patterns and immune infiltration characterization in ischemic stroke based on machine learning.

作者信息

Cai Jiayang, Ye Zhang, Hu Yuanyuan, Yang Ji'an, Wu Liquan, Yuan Fanen, Zhang Li, Chen Qianxue, Zhang Shenqi

机构信息

Department of Neurosurgery, Renmin Hospital of Wuhan University, Wuhan, Hubei, China.

Central Laboratory, Renmin Hospital of Wuhan University, Wuhan, Hubei, China.

出版信息

Front Cell Neurosci. 2022 Dec 19;16:1094500. doi: 10.3389/fncel.2022.1094500. eCollection 2022.

DOI:10.3389/fncel.2022.1094500
PMID:36601430
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9806121/
Abstract

Ischemic stroke (IS) accounts for more than 80% of strokes and is one of the leading causes of death and disability in the world. Due to the narrow time window for treatment and the frequent occurrence of severe bleeding, patients benefit less from early intravenous thrombolytic drug therapy. Therefore, there is an urgent need to explore the molecular mechanisms poststroke to drive the development of new therapeutic approaches. Immunogenic cell death (ICD) is a type of regulatory cell death (RCD) that is sufficient to activate the adaptive immune response of immunocompetent hosts. Although there is growing evidence that ICD regulation of immune responses and immune responses plays an important role in the development of IS, the role of ICD in the pathogenesis of IS has rarely been explored. In this study, we systematically evaluated ICD-related genes in IS. The expression profiles of ICD-related genes in IS and normal control samples were systematically explored. We conducted consensus clustering, immune infiltration analysis, and functional enrichment analysis of IS samples using ICD differentially expressed genes. The results showed that IS patients could be classified into two clusters and that the immune infiltration profile was altered in different clusters. In addition, we performed machine learning to screen nine signature genes that can be used to predict the occurrence of disease. We also constructed nomogram models based on the nine risk genes (CASP1, CASP8, ENTPD1, FOXP3, HSP90AA1, IFNA1, IL1R1, MYD88, and NT5E) and explored the immune infiltration correlation, gene-miRNA, and gene-TF regulatory network of the nine risk genes. Our study may provide a valuable reference for further elucidation of the pathogenesis of IS and provide directions for drug screening, personalized therapy, and immunotherapy for IS.

摘要

缺血性中风(IS)占中风病例的80%以上,是全球死亡和残疾的主要原因之一。由于治疗时间窗狭窄且严重出血频繁发生,早期静脉溶栓药物治疗使患者受益较少。因此,迫切需要探索中风后的分子机制,以推动新治疗方法的开发。免疫原性细胞死亡(ICD)是一种调节性细胞死亡(RCD),足以激活免疫活性宿主的适应性免疫反应。尽管越来越多的证据表明ICD对免疫反应的调节在IS的发展中起重要作用,但ICD在IS发病机制中的作用很少被探索。在本研究中,我们系统地评估了IS中与ICD相关的基因。系统地探索了IS和正常对照样本中与ICD相关基因的表达谱。我们使用ICD差异表达基因对IS样本进行了一致性聚类、免疫浸润分析和功能富集分析。结果表明,IS患者可分为两个聚类,不同聚类中的免疫浸润谱发生了改变。此外,我们进行了机器学习以筛选出九个可用于预测疾病发生的特征基因。我们还基于九个风险基因(CASP1、CASP8、ENTPD1、FOXP3、HSP90AA1、IFNA1、IL1R1、MYD88和NT5E)构建了列线图模型,并探索了这九个风险基因的免疫浸润相关性、基因- miRNA和基因- TF调控网络。我们的研究可能为进一步阐明IS的发病机制提供有价值的参考,并为IS的药物筛选、个性化治疗和免疫治疗提供方向。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39fa/9806121/7eb99ac00f3d/fncel-16-1094500-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39fa/9806121/5f1be1d58f6f/fncel-16-1094500-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39fa/9806121/0dd7983413c9/fncel-16-1094500-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39fa/9806121/05532a962bfb/fncel-16-1094500-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39fa/9806121/c96ae014041a/fncel-16-1094500-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39fa/9806121/b80979609873/fncel-16-1094500-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39fa/9806121/bd09fe54e03d/fncel-16-1094500-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39fa/9806121/796f2d63f7bf/fncel-16-1094500-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39fa/9806121/cdd8c1f4e7a7/fncel-16-1094500-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39fa/9806121/a4554cdecb5a/fncel-16-1094500-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39fa/9806121/7eb99ac00f3d/fncel-16-1094500-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39fa/9806121/5f1be1d58f6f/fncel-16-1094500-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39fa/9806121/0dd7983413c9/fncel-16-1094500-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39fa/9806121/05532a962bfb/fncel-16-1094500-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39fa/9806121/c96ae014041a/fncel-16-1094500-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39fa/9806121/b80979609873/fncel-16-1094500-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39fa/9806121/bd09fe54e03d/fncel-16-1094500-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39fa/9806121/796f2d63f7bf/fncel-16-1094500-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39fa/9806121/cdd8c1f4e7a7/fncel-16-1094500-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39fa/9806121/a4554cdecb5a/fncel-16-1094500-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39fa/9806121/7eb99ac00f3d/fncel-16-1094500-g010.jpg

相似文献

1
Identification of immunogenic cell death-related gene classification patterns and immune infiltration characterization in ischemic stroke based on machine learning.基于机器学习的缺血性卒中免疫原性细胞死亡相关基因分类模式识别及免疫浸润特征分析
Front Cell Neurosci. 2022 Dec 19;16:1094500. doi: 10.3389/fncel.2022.1094500. eCollection 2022.
2
Identification of anoikis-related genes classification patterns and immune infiltration characterization in ischemic stroke based on machine learning.基于机器学习的缺血性卒中中失巢凋亡相关基因分类模式及免疫浸润特征识别
Front Aging Neurosci. 2023 Mar 23;15:1142163. doi: 10.3389/fnagi.2023.1142163. eCollection 2023.
3
Comprehensive analysis of immunogenic cell death-related gene and construction of prediction model based on WGCNA and multiple machine learning in severe COVID-19.严重 COVID-19 免疫原性细胞死亡相关基因的综合分析及基于 WGCNA 和多种机器学习的预测模型构建。
Sci Rep. 2024 Apr 11;14(1):8450. doi: 10.1038/s41598-024-59117-0.
4
An immunogenic cell death-related regulators classification patterns and immune microenvironment infiltration characterization in intracranial aneurysm based on machine learning.基于机器学习的颅内动脉瘤免疫原性细胞死亡相关调控因子分类模式及免疫微环境浸润特征分析。
Front Immunol. 2022 Sep 29;13:1001320. doi: 10.3389/fimmu.2022.1001320. eCollection 2022.
5
Classification and clinical significance of immunogenic cell death-related genes in Plasmodium falciparum infection determined by integrated bioinformatics analysis and machine learning.通过整合生物信息学分析和机器学习确定的疟原虫感染中与免疫原性细胞死亡相关基因的分类和临床意义。
Malar J. 2024 Feb 15;23(1):48. doi: 10.1186/s12936-024-04877-3.
6
Immunogenic cell death-related risk signature predicts prognosis and characterizes the tumour microenvironment in lower-grade glioma.免疫原性细胞死亡相关风险特征可预测低级别胶质瘤的预后并描绘肿瘤微环境。
Front Immunol. 2022 Oct 17;13:1011757. doi: 10.3389/fimmu.2022.1011757. eCollection 2022.
7
Machine learning-based construction of immunogenic cell death-related score for improving prognosis and response to immunotherapy in melanoma.基于机器学习构建免疫原性细胞死亡相关评分,以改善黑色素瘤的预后和免疫治疗反应。
Aging (Albany NY). 2023 Apr 6;15(7):2667-2688. doi: 10.18632/aging.204636.
8
Identification of disulfidptosis-related genes and analysis of immune infiltration characteristics in ischemic strokes.鉴定缺血性脑卒中相关的二硫键错配蛋白病相关基因,并分析其免疫浸润特征。
Math Biosci Eng. 2023 Oct 10;20(10):18939-18959. doi: 10.3934/mbe.2023838.
9
A Machine Learning-Based Classification of Immunogenic Cell Death Regulators and Characterisation of Immune Microenvironment in Acute Ischemic Stroke.基于机器学习的免疫原性细胞死亡调节剂分类及急性缺血性脑卒中免疫微环境特征。
Int J Clin Pract. 2023 Nov 14;2023:9930172. doi: 10.1155/2023/9930172. eCollection 2023.
10
Immunogenic cell death-related classifications in breast cancer identify precise immunotherapy biomarkers and enable prognostic stratification.乳腺癌中免疫原性细胞死亡相关分类可识别精确的免疫治疗生物标志物并实现预后分层。
Front Genet. 2022 Nov 10;13:1052720. doi: 10.3389/fgene.2022.1052720. eCollection 2022.

引用本文的文献

1
Bibliometric and visualized analysis of global distribution and research frontiers in tumor immune escape.肿瘤免疫逃逸全球分布与研究前沿的文献计量学及可视化分析
Front Immunol. 2025 Jun 5;16:1586120. doi: 10.3389/fimmu.2025.1586120. eCollection 2025.
2
Immune infiltration analysis based on pyroptosis-related gene in metabolic dysfunction-associated fatty liver disease.基于焦亡相关基因的代谢功能障碍相关脂肪性肝病免疫浸润分析
Heliyon. 2024 Jul 9;10(15):e34348. doi: 10.1016/j.heliyon.2024.e34348. eCollection 2024 Aug 15.
3
Identification of anoikis-related genes classification patterns and immune infiltration characterization in ischemic stroke based on machine learning.

本文引用的文献

1
An immunogenic cell death-related regulators classification patterns and immune microenvironment infiltration characterization in intracranial aneurysm based on machine learning.基于机器学习的颅内动脉瘤免疫原性细胞死亡相关调控因子分类模式及免疫微环境浸润特征分析。
Front Immunol. 2022 Sep 29;13:1001320. doi: 10.3389/fimmu.2022.1001320. eCollection 2022.
2
Immunogenic cell stress and death.免疫原性细胞应激和死亡。
Nat Immunol. 2022 Apr;23(4):487-500. doi: 10.1038/s41590-022-01132-2. Epub 2022 Feb 10.
3
Comprehensive Landscape of Immune Infiltration and Aberrant Pathway Activation in Ischemic Stroke.
基于机器学习的缺血性卒中中失巢凋亡相关基因分类模式及免疫浸润特征识别
Front Aging Neurosci. 2023 Mar 23;15:1142163. doi: 10.3389/fnagi.2023.1142163. eCollection 2023.
缺血性脑卒中免疫浸润和异常通路激活的全景分析。
Front Immunol. 2022 Jan 24;12:766724. doi: 10.3389/fimmu.2021.766724. eCollection 2021.
4
Immune Cells in the BBB Disruption After Acute Ischemic Stroke: Targets for Immune Therapy?急性缺血性脑卒中后 BBB 破坏中的免疫细胞:免疫治疗的靶点?
Front Immunol. 2021 Jun 23;12:678744. doi: 10.3389/fimmu.2021.678744. eCollection 2021.
5
Monocyte Transmodulation: The Next Novel Therapeutic Approach in Overcoming Ischemic Stroke?单核细胞转调:克服缺血性中风的下一种新型治疗方法?
Front Neurol. 2020 Oct 22;11:578003. doi: 10.3389/fneur.2020.578003. eCollection 2020.
6
Propofol Attenuates Inflammatory Damage via Inhibiting NLRP1-Casp1-Casp6 Signaling in Ischemic Brain Injury.异丙酚通过抑制缺血性脑损伤中的 NLRP1-Casp1-Casp6 信号通路减轻炎症损伤。
Biol Pharm Bull. 2020;43(10):1481-1489. doi: 10.1248/bpb.b20-00050.
7
Immune responses to stroke: mechanisms, modulation, and therapeutic potential.对中风的免疫反应:机制、调节及治疗潜力。
J Clin Invest. 2020 Jun 1;130(6):2777-2788. doi: 10.1172/JCI135530.
8
Caspase-1 inhibition prevents neuronal death by targeting the canonical inflammasome pathway of pyroptosis in a murine model of cerebral ischemia.半胱氨酸天冬氨酸蛋白酶-1 抑制通过靶向缺血性脑卒中小鼠模型中的经典炎症小体通路来防止神经元死亡。
CNS Neurosci Ther. 2020 Sep;26(9):925-939. doi: 10.1111/cns.13384. Epub 2020 Apr 28.
9
Old Dog New Tricks; Revisiting How Stroke Modulates the Systemic Immune Landscape.老狗学新招;重新审视中风如何调节全身免疫格局。
Front Neurol. 2019 Jul 2;10:718. doi: 10.3389/fneur.2019.00718. eCollection 2019.
10
Neuroinflammation: friend and foe for ischemic stroke.神经炎症:缺血性脑卒中的友敌。
J Neuroinflammation. 2019 Jul 10;16(1):142. doi: 10.1186/s12974-019-1516-2.