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土曲霉 ATCC 20541 的全基因组序列特征分析及土曲霉属真菌的基因组比较

Whole genome sequence characterization of Aspergillus terreus ATCC 20541 and genome comparison of the fungi A. terreus.

机构信息

Department of Marine Biotechnology and Resources, National Sun Yat-Sen University, Kaohsiung City, Taiwan.

DTU Bioengineering, Technical University of Denmark, 2800, Kgs. Lyngby, Denmark.

出版信息

Sci Rep. 2023 Jan 5;13(1):194. doi: 10.1038/s41598-022-27311-7.

Abstract

Aspergillus terreus is well-known for lovastatin and itaconic acid production with biomedical and commercial importance. The mechanisms of metabolite formation have been extensively studied to improve their yield through genetic engineering. However, the combined repertoire of carbohydrate-active enzymes (CAZymes), cytochrome P450s (CYP) enzymes, and secondary metabolites (SMs) in the different A. terreus strains has not been well studied yet, especially with respect to the presence of biosynthetic gene clusters (BGCs). Here we present a 30 Mb whole genome sequence of A. terreus ATCC 20541 in which we predicted 10,410 protein-coding genes. We compared the CAZymes, CYPs enzyme, and SMs across eleven A. terreus strains, and the results indicate that all strains have rich pectin degradation enzyme and CYP52 families. The lovastatin BGC of lovI was linked with lovF in A. terreus ATCC 20541, and the phenomenon was not found in the other strains. A. terreus ATCC 20541 lacked a non-ribosomal peptide synthetase (AnaPS) participating in acetylaszonalenin production, which was a conserved protein in the ten other strains. Our results present a comprehensive analysis of CAZymes, CYPs enzyme, and SM diversities in A. terreus strains and will facilitate further research in the function of BGCs associated with valuable SMs.

摘要

土曲霉以生产洛伐他汀和衣康酸而闻名,具有重要的生物医学和商业价值。为了通过基因工程提高其产量,已经对代谢产物形成的机制进行了广泛的研究。然而,不同土曲霉菌株中的碳水化合物活性酶(CAZymes)、细胞色素 P450 酶(CYP)和次生代谢物(SM)的综合目录尚未得到很好的研究,特别是关于生物合成基因簇(BGCs)的存在。在这里,我们展示了土曲霉 ATCC 20541 的 30 Mb 全基因组序列,其中我们预测了 10410 个蛋白质编码基因。我们比较了 11 株土曲霉中的 CAZymes、CYP 酶和 SMs,结果表明所有菌株都具有丰富的果胶降解酶和 CYP52 家族。土曲霉 ATCC 20541 中的 lovastatin BGC 与 lovF 相连,而在其他菌株中并未发现这种现象。土曲霉 ATCC 20541 缺乏参与乙酰唑啉烯生产的非核糖体肽合成酶(AnaPS),而其他 10 株菌株中都存在这种保守蛋白。我们的研究结果对土曲霉菌株中的 CAZymes、CYP 酶和 SM 多样性进行了全面分析,将有助于进一步研究与有价值的 SM 相关的 BGCs 的功能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b2da/9814666/0e0daa1b4f5a/41598_2022_27311_Fig1_HTML.jpg

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