École Normale Supérieure, Laboratoire de Neurosciences Cognitives, Group for Neural Theory, Paris, France.
Coeus Metis Labs, Bordeaux, France.
PLoS Comput Biol. 2023 Jan 10;19(1):e1010792. doi: 10.1371/journal.pcbi.1010792. eCollection 2023 Jan.
Modern well-performing approaches to neural decoding are based on machine learning models such as decision tree ensembles and deep neural networks. The wide range of algorithms that can be utilized to learn from neural spike trains, which are essentially time-series data, results in the need for diverse and challenging benchmarks for neural decoding, similar to the ones in the fields of computer vision and natural language processing. In this work, we propose a spike train classification benchmark, based on open-access neural activity datasets and consisting of several learning tasks such as stimulus type classification, animal's behavioral state prediction, and neuron type identification. We demonstrate that an approach based on hand-crafted time-series feature engineering establishes a strong baseline performing on par with state-of-the-art deep learning-based models for neural decoding. We release the code allowing to reproduce the reported results.
现代表现良好的神经解码方法基于机器学习模型,如决策树集成和深度神经网络。可以利用各种算法从神经尖峰序列中学习,神经尖峰序列本质上是时间序列数据,这导致需要用于神经解码的多样化和具有挑战性的基准,类似于计算机视觉和自然语言处理领域的基准。在这项工作中,我们提出了一个基于开放获取的神经活动数据集的尖峰序列分类基准,包括几个学习任务,如刺激类型分类、动物行为状态预测和神经元类型识别。我们证明,基于手工制作的时间序列特征工程的方法可以建立一个强大的基线,与基于深度学习的神经解码最新模型表现相当。我们发布了允许重现报告结果的代码。