State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, China.
College of Agriculture and Forestry Sciences, Qinghai University, Xining 810016, China.
Genes (Basel). 2023 Jan 11;14(1):194. doi: 10.3390/genes14010194.
The / containing conservative / domains constituted a plant-specific transcription factor (TF) superfamily, called AP2/ERF. The configuration of the AP2/ERF superfamily in maize has remained unresolved. In this study, we identified the 229 genes in the latest (B73 RefGen_v5) maize reference genome. Phylogenetic classification of the / family members categorized it into five clades, including 27 (), 5 (/), 89 (), 105 (), and a soloist. The duplication events of the paralogous genes occurred from 1.724-25.855 MYA, a key route to maize evolution. Structural analysis reveals that they have more introns and few exons. The results showed that 32 regulate biotic stresses, and 24 are involved in responses towards abiotic stresses. Additionally, the expression analysis showed that DREB family members are involved in plant sex determination. The real-time quantitative expression profiling of in the leaves of the maize inbred line B73 under ABA, JA, salt, drought, heat, and wounding stress revealed their specific expression patterns. Conclusively, this study unveiled the evolutionary pathway of and its essential role in stress and developmental processes. The generated information will be useful for stress resilience maize breeding programs.
该 / 包含保守 / 域构成了一个植物特异性转录因子(TF)超家族,称为 AP2/ERF。玉米中 AP2/ERF 超家族的结构仍未解决。在这项研究中,我们鉴定了最新的(B73 RefGen_v5)玉米参考基因组中的 229 个基因。/ 家族成员的系统发育分类将其分为五个分支,包括 27 个 ()、5 个 (/ )、89 个 ()、105 个 () 和一个独唱者。从 1.724 到 25.855 MYA,发生了同源基因的复制事件,这是玉米进化的关键途径。结构分析表明它们具有更多的内含子和较少的外显子。结果表明,32 个调节生物胁迫,24 个参与非生物胁迫的反应。此外,表达分析表明 DREB 家族成员参与植物性别决定。对玉米自交系 B73 在 ABA、JA、盐、干旱、热和创伤胁迫下叶片中 的实时定量表达谱分析显示了它们的特定表达模式。总之,本研究揭示了 / 的进化途径及其在应激和发育过程中的重要作用。生成的信息将有助于抗应激玉米育种计划。