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一种异养固氮菌新型附生生物的宏基因组组装基因组

Metagenome-Assembled Genome of a Novel Epibiont of a Heterotrophic Diazotroph.

作者信息

DeMers Michelle, Graham Elaina D, Heidelberg John F, Webb Eric A

机构信息

Department of Biological Sciences, University of Southern California, Los Angeles, California, USA.

出版信息

Microbiol Resour Announc. 2023 Feb 16;12(2):e0059422. doi: 10.1128/mra.00594-22. Epub 2023 Jan 23.

DOI:10.1128/mra.00594-22
PMID:36688647
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9933675/
Abstract

Here, we describe the metagenome-assembled genome (MAG) HetDA_MAG_SS2, in the family . It was found in association with a HetDA cyanobiont isolated from a Station ALOHA colony. Annotation suggests that HetDA_MAG_SS2 is a chemoorganoheterotroph with the potential for lithoheterotrophy, containing genes for aerobic respiration, mixed acid fermentation, dissimilatory nitrate reduction to ammonium, and sulfide oxidation.

摘要

在这里,我们描述了属于该家族的宏基因组组装基因组(MAG)HetDA_MAG_SS2。它是在与从ALOHA站菌落分离出的HetDA蓝藻共生体相关联的情况下被发现的。注释表明HetDA_MAG_SS2是一种具有石质异养潜力的化学有机异养生物,含有有氧呼吸、混合酸发酵、异化硝酸盐还原为铵以及硫化物氧化的基因。

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本文引用的文献

1
MetaSanity: an integrated microbial genome evaluation and annotation pipeline.MetaSanity:一个集成的微生物基因组评估和注释管道。
Bioinformatics. 2020 Aug 1;36(15):4341-4344. doi: 10.1093/bioinformatics/btaa512.
2
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.GTDB-Tk:一个使用基因组分类数据库对基因组进行分类的工具包。
Bioinformatics. 2019 Nov 15;36(6):1925-7. doi: 10.1093/bioinformatics/btz848.
3
Distinct nitrogen cycling and steep chemical gradients in Trichodesmium colonies.束毛藻属群体中独特的氮循环和陡峭的化学梯度。
ISME J. 2020 Feb;14(2):399-412. doi: 10.1038/s41396-019-0514-9. Epub 2019 Oct 21.
4
Sulfur metabolites in the pelagic ocean.海洋浮游生物中的硫代谢物。
Nat Rev Microbiol. 2019 Nov;17(11):665-678. doi: 10.1038/s41579-019-0250-1. Epub 2019 Sep 4.
5
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies.MetaBAT 2:一种用于从宏基因组组装中进行稳健且高效的基因组重建的自适应分箱算法。
PeerJ. 2019 Jul 26;7:e7359. doi: 10.7717/peerj.7359. eCollection 2019.
6
Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy.通过去重、聚合和评分策略从宏基因组中恢复基因组。
Nat Microbiol. 2018 Jul;3(7):836-843. doi: 10.1038/s41564-018-0171-1. Epub 2018 May 28.
7
The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans.重建来自全球海洋的 2631 个宏基因组组装基因组。
Sci Data. 2018 Jan 16;5:170203. doi: 10.1038/sdata.2017.203.
8
The Trichodesmium consortium: conserved heterotrophic co-occurrence and genomic signatures of potential interactions.束毛藻共生体:潜在相互作用的保守异养共生及基因组特征
ISME J. 2017 Aug;11(8):1813-1824. doi: 10.1038/ismej.2017.49. Epub 2017 Apr 25.
9
BinSanity: unsupervised clustering of environmental microbial assemblies using coverage and affinity propagation.BinSanity:利用覆盖度和亲和传播对环境微生物组装体进行无监督聚类。
PeerJ. 2017 Mar 8;5:e3035. doi: 10.7717/peerj.3035. eCollection 2017.
10
MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices.MEGAHIT v1.0:一种由先进方法和社区实践驱动的快速且可扩展的宏基因组组装工具。
Methods. 2016 Jun 1;102:3-11. doi: 10.1016/j.ymeth.2016.02.020. Epub 2016 Mar 21.