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重新分析临床外显子组,在两名隐性疾病患者中发现第二个变异体。

Reanalysis of clinical exome identifies the second variant in two individuals with recessive disorders.

机构信息

Division of Newborn Medicine, Boston Children's Hospital, Boston, MA, USA.

Division of Genetics and Genomics, Boston Children's Hospital, Boston, MA, USA.

出版信息

Eur J Hum Genet. 2023 Jun;31(6):712-715. doi: 10.1038/s41431-023-01291-2. Epub 2023 Jan 23.

Abstract

Clinical exome/genome sequencing is increasingly being utilized by clinicians to diagnose various likely genetic conditions, but many cases remain undiagnosed. In a subset of those undiagnosed cases, a single heterozygous variant in an autosomal recessive (AR) condition with consistent phenotype may be identified, raising the question if a second variant is missing. Here, we report two cases of recessive conditions in which only one heterozygous variant was initially reported by clinical exome sequencing, and on research reanalysis a second heterozygous variant in trans was identified. We performed a review of the existing exome reanalysis literature and found that this aspect is often not emphasized. These findings highlight the importance of data reanalysis in undiagnosed cases where only a single disease-associated variant is identified in an AR condition with a strong link to presenting phenotype.

摘要

临床外显子/基因组测序正越来越多地被临床医生用于诊断各种可能的遗传疾病,但仍有许多病例未被诊断。在这些未确诊病例的一个亚组中,可能会发现常染色体隐性 (AR) 疾病中存在单一杂合变异,且表型一致,这就提出了是否存在第二个变异的问题。在这里,我们报告了两个隐性疾病的病例,在这些病例中,临床外显子测序最初仅报告了一个杂合变异,在重新研究分析中,发现了另一个位于反式的杂合变异。我们对现有的外显子重新分析文献进行了回顾,发现这一方面通常没有被强调。这些发现强调了在 AR 疾病中,当仅在与表型有很强关联的情况下发现一个与疾病相关的变异时,对数据进行重新分析的重要性。

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本文引用的文献

1
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2
A three-year follow-up study evaluating clinical utility of exome sequencing and diagnostic potential of reanalysis.
NPJ Genom Med. 2020 Sep 10;5(1):37. doi: 10.1038/s41525-020-00144-x. eCollection 2020.
3
Patient-Customized Oligonucleotide Therapy for a Rare Genetic Disease.
N Engl J Med. 2019 Oct 24;381(17):1644-1652. doi: 10.1056/NEJMoa1813279. Epub 2019 Oct 9.
4
Reanalysis of Clinical Exome Sequencing Data.
N Engl J Med. 2019 Jun 20;380(25):2478-2480. doi: 10.1056/NEJMc1812033.
6
Unique bioinformatic approach and comprehensive reanalysis improve diagnostic yield of clinical exomes.
Eur J Hum Genet. 2019 Sep;27(9):1398-1405. doi: 10.1038/s41431-019-0401-x. Epub 2019 Apr 12.
7
Ryanodine Receptor 1-Related Myopathies: Diagnostic and Therapeutic Approaches.
Neurotherapeutics. 2018 Oct;15(4):885-899. doi: 10.1007/s13311-018-00677-1.
8
Systematic reanalysis of clinical exome data yields additional diagnoses: implications for providers.
Genet Med. 2017 Feb;19(2):209-214. doi: 10.1038/gim.2016.88. Epub 2016 Jul 21.
9
Genetics of human Bardet-Biedl syndrome, an updates.
Clin Genet. 2016 Jul;90(1):3-15. doi: 10.1111/cge.12737. Epub 2016 Feb 9.
10
RYR1-related myopathies: a wide spectrum of phenotypes throughout life.
Eur J Neurol. 2015 Jul;22(7):1094-112. doi: 10.1111/ene.12713. Epub 2015 May 11.

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