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Concomitant analyses of intratumoral microbiota and genomic features reveal distinct racial differences in breast cancer.

作者信息

Parida Sheetal, Siddharth Sumit, Xia Yuqing, Sharma Dipali

机构信息

Department of Oncology, Johns Hopkins University School of Medicine and Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins, Baltimore, MD, USA.

出版信息

NPJ Breast Cancer. 2023 Jan 26;9(1):4. doi: 10.1038/s41523-023-00505-6.


DOI:10.1038/s41523-023-00505-6
PMID:36702853
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9880005/
Abstract

Racial disparities are most accentuated among Black women as their lifetime risk of breast cancer incidence is lower than white and Asian women but their breast cancer related mortality is the highest among all races. Black women are more likely to develop triple-negative breast cancer at a younger age and harbor more aggressive tumors. In addition to tumor-centric alterations, tumor growth is also influenced by multiple other tumor microenvironment-related features, including resident immune cells and microbiota. Hence, in this study, we conduct concurrent genomic and metagenomic analyses, and uncover distinctive intratumoral microbial community compositions and tumor immune microenvironment-related traits in breast tumors from Asian, Black and white women. Interestingly, unique racially associated genomic nodes are found in the breast tumors from Asian, Black and white women. Examination of the cellular heterogeneity show differential enrichment of 11 out of 64 immune and stroma cell types in the breast tumors from different racial groups. In terms of microbial diversity, significant differences are revealed in alpha and beta-diversity measures. Intriguingly, potential race-specific microbial biomarkers of breast cancer are identified which significantly correlate with genes involved with tumor aggressiveness, angiogenesis, tumor cell migration and metastasis as well as oncogenic pathways-GLI and Notch. Investigating the metabolic features of intratumoral microbes, we find a significant differential enrichment of environmental information processing pathways, oncogenic pathways, and lipid metabolism pathways. Concomitantly investigating tumor-centric, tumor immune microenvironment-related and microbial alterations, our study provides a comprehensive understanding of racial disparities in breast cancer and warrants further exploration.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b8d/9880005/ccd3883244bd/41523_2023_505_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b8d/9880005/7f43e38372b2/41523_2023_505_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b8d/9880005/6d7b80fee222/41523_2023_505_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b8d/9880005/f2aaaf83c01b/41523_2023_505_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b8d/9880005/32406b0d61f4/41523_2023_505_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b8d/9880005/19421c453620/41523_2023_505_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b8d/9880005/e493de6f6d89/41523_2023_505_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b8d/9880005/376d5af3c928/41523_2023_505_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b8d/9880005/ccd3883244bd/41523_2023_505_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b8d/9880005/7f43e38372b2/41523_2023_505_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b8d/9880005/6d7b80fee222/41523_2023_505_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b8d/9880005/f2aaaf83c01b/41523_2023_505_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b8d/9880005/32406b0d61f4/41523_2023_505_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b8d/9880005/19421c453620/41523_2023_505_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b8d/9880005/e493de6f6d89/41523_2023_505_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b8d/9880005/376d5af3c928/41523_2023_505_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6b8d/9880005/ccd3883244bd/41523_2023_505_Fig8_HTML.jpg

相似文献

[1]
Concomitant analyses of intratumoral microbiota and genomic features reveal distinct racial differences in breast cancer.

NPJ Breast Cancer. 2023-1-26

[2]
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[3]
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[4]
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[5]
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Mol Clin Oncol. 2022-4

[6]
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Breast Cancer Res Treat. 2018-2-14

[7]
Integrating bulk and single-cell RNA sequencing data reveals the relationship between intratumor microbiome signature and host metabolic heterogeneity in breast cancer.

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[8]
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[9]
Characterization of the Metabolome of Breast Tissues from Non-Hispanic Black and Non-Hispanic White Women Reveals Correlations between Microbial Dysbiosis and Enhanced Lipid Metabolism Pathways in Triple-Negative Breast Tumors.

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[10]
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引用本文的文献

[1]
Characterization of intra-tumoral microbiota from transcriptomic sequencing of Asian breast cancer.

Sci Rep. 2025-8-24

[2]
Race-related host and microbe transcriptomic signatures in triple-negative breast cancer.

NPJ Breast Cancer. 2025-8-8

[3]
The microbiota in breast cancer: dysbiosis, microbial metabolites, and therapeutic implications.

Am J Cancer Res. 2025-4-15

[4]
Tumor-colonizing metabolically reprograms the tumor microenvironment and promotes breast ductal carcinoma.

mBio. 2025-5-14

[5]
Interactions between the tumor microbiota and breast cancer.

Front Cell Infect Microbiol. 2025-1-24

[6]
Endocrine-targeting therapies shift the breast microbiome to reduce estrogen receptor-α breast cancer risk.

Cell Rep Med. 2025-1-21

[7]
The Genomic and Biologic Landscapes of Breast Cancer and Racial Differences.

Int J Mol Sci. 2024-12-7

[8]
Social vulnerability is associated with advanced breast cancer presentation and all-cause mortality: a retrospective cohort study.

Breast Cancer Res. 2024-12-3

[9]
The TRIM37 variant rs57141087 contributes to triple-negative breast cancer outcomes in Black women.

EMBO Rep. 2025-1

[10]
Fecal microbial transplants as investigative tools in cancer.

Am J Physiol Gastrointest Liver Physiol. 2024-11-1

本文引用的文献

[1]
Concomitant activation of GLI1 and Notch1 contributes to racial disparity of human triple negative breast cancer progression.

Elife. 2021-12-10

[2]
Looking Back to : History of the Antibiotic Discovery and Future Prospects.

Antibiotics (Basel). 2021-10-15

[3]
Risk factors for breast cancer subtypes among Black women undergoing screening mammography.

Breast Cancer Res Treat. 2021-10

[4]
Commensal bacteria and fungi differentially regulate tumor responses to radiation therapy.

Cancer Cell. 2021-9-13

[5]
Gut microbiome heritability is nearly universal but environmentally contingent.

Science. 2021-7-9

[6]
Intestinal microbiota influences clinical outcome and side effects of early breast cancer treatment.

Cell Death Differ. 2021-9

[7]
The onco-immunological implications of Fusobacterium nucleatum in breast cancer.

Immunol Lett. 2021-4

[8]
Association of Race/Ethnicity and the 21-Gene Recurrence Score With Breast Cancer-Specific Mortality Among US Women.

JAMA Oncol. 2021-3-1

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Cancer Statistics, 2021.

CA Cancer J Clin. 2021-1

[10]
A Procarcinogenic Colon Microbe Promotes Breast Tumorigenesis and Metastatic Progression and Concomitantly Activates Notch and β-Catenin Axes.

Cancer Discov. 2021-5

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