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舒巴坦对结核分枝杆菌β-内酰胺酶抑制作用的异质性

Heterogeneity in the M. tuberculosis β-Lactamase Inhibition by Sulbactam.

作者信息

Schmidt Marius, Malla Tek Narsingh, Zielinski Kara, Aldama Luis, Bajt Sasa, Feliz Denisse, Hayes Brandon, Hunter Mark, Kupitz Christopher, Lisova Stella, Knoska Juraj, Martin-Garcia Jose, Mariani Valerio, Pandey Suraj, Poudyal Ishwor, Sierra Raymond, Tolstikova Alexandra, Yefanov Oleksandr, Yoon Ching Hong, Ourmazd Abbas, Fromme Petra, Schwander Peter, Barty Anton, Chapman Henry, Stojković Emina, Batyuk Alexander, Boutet Sébastien, Phillips George, Pollack Lois

机构信息

Univ of Wisconsin, Milwaukee.

University of Wisconsin Milwaukee.

出版信息

Res Sq. 2023 Jan 10:rs.3.rs-2334665. doi: 10.21203/rs.3.rs-2334665/v1.

Abstract

For decades, researchers have been determined to elucidate essential enzymatic functions on the atomic lengths scale by tracing atomic positions in real time. Our work builds on new possibilities unleashed by mix-and-inject serial crystallography (MISC) at X-ray free electron laser facilities. In this approach, enzymatic reactions are triggered by mixing substrate or ligand solutions with enzyme microcrystals . Here, we report in atomic detail and with millisecond time-resolution how the enzyme BlaC is inhibited by sulbactam (SUB). Our results reveal ligand binding heterogeneity, ligand gating , cooperativity, induced fit and conformational selection all from the same set of MISC data, detailing how SUB approaches the catalytic clefts and binds to the enzyme non-covalently before reacting to a enamine. This was made possible in part by the application of the singular value decomposition to the MISC data using a newly developed program that remains functional even if unit cell parameters change during the reaction.

摘要

几十年来,研究人员一直决心通过实时追踪原子位置,在原子长度尺度上阐明基本的酶功能。我们的工作建立在X射线自由电子激光设施的混合注入串行晶体学(MISC)带来的新可能性之上。在这种方法中,酶促反应是通过将底物或配体溶液与酶微晶混合来触发的。在此,我们以原子细节和毫秒级时间分辨率报告了舒巴坦(SUB)如何抑制酶BlaC。我们的结果从同一组MISC数据中揭示了配体结合异质性、配体门控、协同性、诱导契合和构象选择,详细说明了SUB如何接近催化裂隙并在与烯胺反应之前非共价结合到酶上。这在一定程度上得益于使用新开发的程序对MISC数据应用奇异值分解,该程序即使在反应过程中晶胞参数发生变化仍能正常运行。

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