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利奈唑胺对结核分枝杆菌β-内酰胺酶的抑制作用存在异质性。

Heterogeneity in M. tuberculosis β-lactamase inhibition by Sulbactam.

机构信息

Physics Department, University of Wisconsin-Milwaukee, Milwaukee, WI, USA.

School of Applied and Engineering Physics, Cornell University, Ithaca, NY, USA.

出版信息

Nat Commun. 2023 Sep 7;14(1):5507. doi: 10.1038/s41467-023-41246-1.

Abstract

For decades, researchers have elucidated essential enzymatic functions on the atomic length scale by tracing atomic positions in real-time. Our work builds on possibilities unleashed by mix-and-inject serial crystallography (MISC) at X-ray free electron laser facilities. In this approach, enzymatic reactions are triggered by mixing substrate or ligand solutions with enzyme microcrystals. Here, we report in atomic detail (between 2.2 and 2.7 Å resolution) by room-temperature, time-resolved crystallography with millisecond time-resolution (with timepoints between 3 ms and 700 ms) how the Mycobacterium tuberculosis enzyme BlaC is inhibited by sulbactam (SUB). Our results reveal ligand binding heterogeneity, ligand gating, cooperativity, induced fit, and conformational selection all from the same set of MISC data, detailing how SUB approaches the catalytic clefts and binds to the enzyme noncovalently before reacting to a trans-enamine. This was made possible in part by the application of singular value decomposition to the MISC data using a program that remains functional even if unit cell parameters change up to 3 Å during the reaction.

摘要

几十年来,研究人员通过实时追踪原子位置,在原子尺度上阐明了酶的基本功能。我们的工作建立在混合注入式连续结晶学(MISC)在 X 射线自由电子激光设施上释放的可能性的基础上。在这种方法中,通过将底物或配体溶液与酶微晶体混合来触发酶反应。在这里,我们通过室温下具有毫秒时间分辨率(时间点在 3ms 到 700ms 之间)的、时间分辨的晶体学以原子分辨率详细报告(分辨率在 2.2 到 2.7Å 之间)分枝杆菌酶 BlaC 如何被舒巴坦(SUB)抑制。我们的结果揭示了配体结合的异质性、配体门控、协同作用、诱导契合和构象选择,所有这些都来自同一组 MISC 数据,详细说明了 SUB 如何接近催化裂缝,并在发生反式烯胺反应之前与酶非共价结合。这在一定程度上是通过对 MISC 数据应用奇异值分解来实现的,该程序即使在反应过程中单元参数变化高达 3Å 时仍保持功能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7bd1/10485065/fb19918a5cb1/41467_2023_41246_Fig1_HTML.jpg

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