从瑞士土壤样本中分离出的白色黄链霉菌CCOS 2040的高质量基因组草图序列
High-Quality Draft Genome Sequence of Streptomyces albidoflavus CCOS 2040, Isolated from a Swiss Soil Sample.
作者信息
Pothier Joël F, Bolt Valentin, Arn Fabienne, Frasson David, Rhyner Nicola, Sievers Martin
机构信息
Environmental Genomics and Systems Biology Research Group, Institute of Natural Resource Sciences, Zurich University of Applied Sciences (ZHAW), Wädenswil, Switzerland.
Microbiology and Molecular Biology, Institute of Chemistry and Biotechnology, ZHAW, Wädenswil, Switzerland.
出版信息
Microbiol Resour Announc. 2023 Mar 16;12(3):e0122522. doi: 10.1128/mra.01225-22. Epub 2023 Feb 1.
Abstract
Here, we report the high-quality draft genome sequence of the actinomycete Streptomyces albidoflavus CCOS 2040, isolated from a Swiss soil sample. The genome contains 7,136,301 bp with 73.35% GC content. In total, 22 biosynthetic gene clusters, including polyketides and terpenes, were predicted within the sequenced genome.
摘要
在此，我们报告了从瑞士土壤样本中分离出的放线菌白色黄链霉菌CCOS 2040的高质量基因组草图序列。该基因组包含7,136,301个碱基对，GC含量为73.35%。在测序的基因组中总共预测出22个生物合成基因簇，包括聚酮化合物和萜类化合物。
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本文引用的文献
1
Bilateral symmetry of linear streptomycete chromosomes.线性链霉菌染色体的两侧对称。
Microb Genom. 2021 Nov;7(11). doi: 10.1099/mgen.0.000692.
2
Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification.Bakta：通过无比对序列鉴定实现细菌基因组的快速标准化注释。
Microb Genom. 2021 Nov;7(11). doi: 10.1099/mgen.0.000685.
3
Isolation and Identification of Actinomycetes Strains from Switzerland and their Biotechnological Potential.从瑞士分离和鉴定放线菌菌株及其生物技术潜力。
Chimia (Aarau). 2020 May 27;74(5):382-390. doi: 10.2533/chimia.2020.382.
4
Telomeric and sub-telomeric regions undergo rapid turnover within a Streptomyces population.端粒和亚端粒区域在链霉菌种群内经历快速周转。
Sci Rep. 2020 May 7;10(1):7720. doi: 10.1038/s41598-020-63912-w.
5
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy.TYGS 是一个自动化的高通量平台，用于最先进的基于基因组的分类学。
Nat Commun. 2019 May 16;10(1):2182. doi: 10.1038/s41467-019-10210-3.
6
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器：从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
7
Hybrid assembly of the large and highly repetitive genome of , a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm.利用MaSuRCA巨读算法对面包小麦的祖先之一——[具体物种名称未给出]的大型高度重复基因组进行混合组装。
Genome Res. 2017 May;27(5):787-792. doi: 10.1101/gr.213405.116. Epub 2017 Jan 27.
8
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.antiSMASH：快速识别、注释和分析细菌和真菌基因组序列中次生代谢产物生物合成基因簇。
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W339-46. doi: 10.1093/nar/gkr466. Epub 2011 Jun 14.
9
Soil to genomics: the Streptomyces chromosome.从土壤到基因组学：链霉菌染色体
Annu Rev Genet. 2006;40:1-23. doi: 10.1146/annurev.genet.40.110405.090639.
10
The telomeres of Streptomyces chromosomes contain conserved palindromic sequences with potential to form complex secondary structures.链霉菌染色体的端粒含有保守的回文序列，有可能形成复杂的二级结构。
Mol Microbiol. 1998 Jun;28(5):905-16. doi: 10.1046/j.1365-2958.1998.00856.x.
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