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极端微生物基因组 DNA 中的移动和自维持数据存储

Mobile and Self-Sustained Data Storage in an Extremophile Genomic DNA.

机构信息

Center for Quantitative Biology, Peking University, 5 Yiheyuan Road Haidian District, Beijing, 100871, P. R. China.

Academician Workstation of BGI Synthetic Genomics, BGI-Shenzhen, Huada Comprehensive Park, Yantian District, Shenzhen, 518083, P. R. China.

出版信息

Adv Sci (Weinh). 2023 Apr;10(10):e2206201. doi: 10.1002/advs.202206201. Epub 2023 Feb 3.

Abstract

DNA has been pursued as a novel biomaterial for digital data storage. While large-scale data storage and random access have been achieved in DNA oligonucleotide pools, repeated data accessing requires constant data replenishment, and these implementations are confined in professional facilities. Here, a mobile data storage system in the genome of the extremophile Halomonas bluephagenesis, which enables dual-mode storage, dynamic data maintenance, rapid readout, and robust recovery. The system relies on two key components: A versatile genetic toolbox for the integration of 10-100 kb scale synthetic DNA into H. bluephagenesis genome and an efficient error correction coding scheme targeting noisy nanopore sequencing reads. The storage and repeated retrieval of 5 KB data under non-laboratory conditions are demonstrated. The work highlights the potential of DNA data storage in domestic and field scenarios, and expands its application domain from archival data to frequently accessed data.

摘要

DNA 一直被视为一种新颖的生物材料,用于数字数据存储。虽然在 DNA 寡核苷酸库中已经实现了大规模数据存储和随机访问,但重复的数据访问需要不断的数据补充,而且这些实现仅限于专业设施。在这里,一种在极端嗜盐菌 Halomonas bluephagenesis 基因组中的移动数据存储系统,可以实现双模式存储、动态数据维护、快速读取和稳健恢复。该系统依赖于两个关键组件:一个多功能遗传工具箱,用于将 10-100 kb 规模的合成 DNA 整合到 H. bluephagenesis 基因组中,以及一种针对嘈杂的纳米孔测序读取的高效纠错编码方案。在非实验室条件下,演示了 5 KB 数据的存储和重复检索。这项工作突出了 DNA 数据存储在家庭和现场场景中的潜力,并将其应用领域从存档数据扩展到经常访问的数据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/78c7/10074078/cdc25d77afaa/ADVS-10-2206201-g001.jpg

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