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"Cell Disk" 可随机读写的 DNA 存储系统。

"Cell Disk" DNA Storage System Capable of Random Reading and Rewriting.

机构信息

School of Ecology and Environment, Northwestern Polytechnical University, 1 Dongxiang Road, Chang'an District, Xi'an, Shaanxi, 710129, P. R. China.

Shenzhen Key Laboratory of Synthetic Genomics, Guangdong Provincial Key Laboratory of Synthetic Genomics, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong, 518055, P. R. China.

出版信息

Adv Sci (Weinh). 2024 Apr;11(15):e2305921. doi: 10.1002/advs.202305921. Epub 2024 Feb 8.

Abstract

DNA has emerged as an appealing material for information storage due to its great storage density and durability. Random reading and rewriting are essential tasks for practical large-scale data storage. However, they are currently difficult to implement simultaneously in a single DNA-based storage system, strongly limiting their practicability. Here, a "Cell Disk" storage system is presented, achieving high-density in vivo DNA data storage that enables both random reading and rewriting. In this system, each yeast cell is used as a chamber to store information, similar to a "disk block" but with the ability to self-replicate. Specifically, each genome of yeast cell has a customized CRISPR/Cas9-based "lock-and-key" module inserted, which allows selective retrieval, erasure, or rewriting of the targeted cell "block" from a pool of cells ("disk"). Additionally, a codec algorithm with lossless compression ability is developed to improve the information density of each cell "block". As a proof of concept, target-specific reading and rewriting of the compressed data from a mimic cell "disk" comprising up to 10 "blocks" are demonstrated and achieve high specificity and reliability. The "Cell Disk" system described here concurrently supports random reading and rewriting, and it should have great scalability for practical data storage use.

摘要

由于其巨大的存储密度和耐久性,DNA 已成为信息存储的一种有吸引力的材料。随机读取和重写是实际大规模数据存储的基本任务。然而,目前在单个基于 DNA 的存储系统中同时实现这两个功能具有挑战性,这强烈限制了它们的实用性。在这里,提出了一种“细胞磁盘”存储系统,实现了高密​​度的体内 DNA 数据存储,同时支持随机读取和重写。在该系统中,每个酵母细胞都用作存储信息的腔室,类似于“磁盘块”,但具有自我复制的能力。具体来说,每个酵母细胞的基因组都插入了一个定制的基于 CRISPR/Cas9 的“锁和键”模块,该模块允许从细胞库中选择性地检索、擦除或重写目标细胞“块”(“磁盘”)。此外,还开发了一种具有无损压缩能力的编解码器算法,以提高每个细胞“块”的信息密度。作为概念验证,从包含多达 10 个“块”的模拟细胞“磁盘”中对压缩数据进行了目标特异性的读取和重写,实现了高特异性和可靠性。这里描述的“细胞磁盘”系统同时支持随机读取和重写,并且对于实际数据存储应用应该具有很大的可扩展性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af0a/11022697/d6994bdafa2c/ADVS-11-2305921-g003.jpg

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