昆虫寄生线虫的基因组草图
Draft Genome of the Insect-Parasitic Nematode .
作者信息
Ste-Croix Dave T, Gagnon Annie-Ève, Mimee Benjamin
机构信息
Agriculture and Agri-Food Canada, Saint-Jean-sur-Richelieu Research and Development Centre, Saint-Jean-sur-Richelieu, QC J3B 3E6, Canada.
出版信息
J Nematol. 2022 Dec 14;54(1):20220047. doi: 10.2478/jofnem-2022-0047. eCollection 2022 Feb.
Abstract
is an insect-parasitic nematode known to infect the carrot weevil, . We present the first sequence for this species and for any Allantonematidae, produced with a combination of short and long reads. The draft genome of is 80.6 Mb in size, assembled in 152 scaffolds.
摘要
是一种已知会感染胡萝卜象鼻虫的昆虫寄生线虫。我们展示了该物种以及任何链蚧科物种的首个序列，该序列是通过短读长和长读长相结合产生的。该物种的基因组草图大小为80.6 Mb，组装在152个支架中。
相似文献
1
Draft Genome of the Insect-Parasitic Nematode .昆虫寄生线虫的基因组草图
J Nematol. 2022 Dec 14;54(1):20220047. doi: 10.2478/jofnem-2022-0047. eCollection 2022 Feb.
2
Prevalence of a nematode castrator of the carrot weevil and impact on fecundity and survival.胡萝卜象鼻虫一种线虫去势者的患病率及其对繁殖力和生存的影响。
Parasitology. 2019 May;146(6):702-707. doi: 10.1017/S0031182018002056. Epub 2018 Dec 20.
3
Population genetic structure of the carrot weevil () in North America.北美洲胡萝卜象甲（）的种群遗传结构
Evol Appl. 2022 Feb 1;15(2):300-315. doi: 10.1111/eva.13343. eCollection 2022 Feb.
4
5
The effect of temperature on host patch exploitation by an egg parasitoid.温度对卵寄生蜂宿主斑块利用的影响。
PLoS One. 2021 Jul 21;16(7):e0254750. doi: 10.1371/journal.pone.0254750. eCollection 2021.
6
The Genome of Setaria digitata: A Cattle Nematode Closely Related to Human Filarial Parasites.《节节麦基因组：与人类丝虫寄生虫密切相关的牛线虫》。
Genome Biol Evol. 2020 Feb 1;12(2):3971-3976. doi: 10.1093/gbe/evaa017.
7
Nematode genome announcement: The draft genome sequence of entomopathogenic nematode .线虫基因组发布：昆虫病原线虫的基因组序列草图
J Nematol. 2022 Jan 21;53. doi: 10.21307/jofnem-2021-101. eCollection 2021.
8
Genome Assembly of the A-Group Wolbachia in Nasonia oneida Using Linked-Reads Technology.利用连接读取技术对 Nasonia oneida 中的 A 组沃尔巴克氏体进行基因组组装。
Genome Biol Evol. 2019 Oct 1;11(10):3008-3013. doi: 10.1093/gbe/evz223.
9
Genome Announcement: The Draft Genome of the Carrot Cyst Nematode .基因组公告：胡萝卜孢囊线虫基因组草图
J Nematol. 2022 May 29;54(1):20220014. doi: 10.2478/jofnem-2022-0014. eCollection 2022 Feb.
10
Genomic analysis of the nomenclatural type strain of the nematode-associated entomopathogenic bacterium Providencia vermicola.对与线虫共生的昆虫病原细菌 Providencia vermicola 的命名模式菌株进行基因组分析。
BMC Genomics. 2021 Oct 2;22(1):708. doi: 10.1186/s12864-021-08027-w.
本文引用的文献
1
BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes.BUSCO 更新：用于真核生物、原核生物和病毒基因组评分的新颖且简化的工作流程以及更广泛和更深的系统发育覆盖范围。
Mol Biol Evol. 2021 Sep 27;38(10):4647-4654. doi: 10.1093/molbev/msab199.
2
BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database.BRAKER2：借助蛋白质数据库，由GeneMark-EP+和AUGUSTUS支持的真核生物基因组自动注释工具。
NAR Genom Bioinform. 2021 Jan 6;3(1):lqaa108. doi: 10.1093/nargab/lqaa108. eCollection 2021 Mar.
3
Genomic Profiling of Virulence in the Soybean Cyst Nematode Using Single-Nematode Sequencing.利用单条线虫测序技术对大豆胞囊线虫的毒力进行基因组分析。
Phytopathology. 2021 Jan;111(1):137-148. doi: 10.1094/PHYTO-08-20-0348-FI. Epub 2020 Dec 14.
4
HASLR: Fast Hybrid Assembly of Long Reads.HASLR：长读段的快速混合组装
iScience. 2020 Aug 21;23(8):101389. doi: 10.1016/j.isci.2020.101389. Epub 2020 Jul 25.
5
BlobToolKit - Interactive Quality Assessment of Genome Assemblies.BlobToolKit - 基因组组装的交互式质量评估。
G3 (Bethesda). 2020 Apr 9;10(4):1361-1374. doi: 10.1534/g3.119.400908.
6
Whole-Genome Annotation with BRAKER.使用BRAKER进行全基因组注释。
Methods Mol Biol. 2019;1962:65-95. doi: 10.1007/978-1-4939-9173-0_5.
7
Assembly of long, error-prone reads using repeat graphs.使用重复图组装长的、易错的读取。
Nat Biotechnol. 2019 May;37(5):540-546. doi: 10.1038/s41587-019-0072-8. Epub 2019 Apr 1.
8
Prevalence of a nematode castrator of the carrot weevil and impact on fecundity and survival.胡萝卜象鼻虫一种线虫去势者的患病率及其对繁殖力和生存的影响。
Parasitology. 2019 May;146(6):702-707. doi: 10.1017/S0031182018002056. Epub 2018 Dec 20.
9
fastp: an ultra-fast all-in-one FASTQ preprocessor.fastp：一个超快速的一体化 FASTQ 预处理程序。
Bioinformatics. 2018 Sep 1;34(17):i884-i890. doi: 10.1093/bioinformatics/bty560.
10
GenomeScope: fast reference-free genome profiling from short reads.GenomeScope：从短读长实现快速无参基因组剖析。
Bioinformatics. 2017 Jul 15;33(14):2202-2204. doi: 10.1093/bioinformatics/btx153.
Zotero 插件