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《节节麦基因组:与人类丝虫寄生虫密切相关的牛线虫》。

The Genome of Setaria digitata: A Cattle Nematode Closely Related to Human Filarial Parasites.

机构信息

Institute of Biochemistry, Molecular Biology and Biotechnology, University of Colombo, Sri Lanka.

SLU Global Bioinformatics Centre, Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala, Sweden.

出版信息

Genome Biol Evol. 2020 Feb 1;12(2):3971-3976. doi: 10.1093/gbe/evaa017.

Abstract

Here we present the draft genome sequence of Setaria digitata, a parasitic nematode affecting cattle. Due to its similarity to Wuchereria bancrofti, the parasitic nematode that causes lymphatic filariasis in humans, S. digitata has been used as a model organism at the genomic level to find drug targets which can be used for the development of novel drugs and/or vaccines for human filariasis. Setaria digitata causes cerebrospinal nematodiasis in goats, sheep, and horses posing a serious threat to livestock in developing countries. The genome sequence of S. digitata will assist in finding candidate genes to use as drug targets in both S. digitata and W. bancrofti. The assembled draft genome is ∼90 Mb long and contains 8,974 genomic scaffolds with a G+C content of 31.73%.

摘要

我们在此呈现影响牛的寄生线虫——双芽巴贝斯虫的基因组草案序列。由于其与引起人类淋巴丝虫病的寄生线虫——班氏吴策线虫相似,双芽巴贝斯虫已被用作基因组水平的模式生物,以寻找可用于开发针对人类丝虫病的新型药物和/或疫苗的药物靶点。双芽巴贝斯虫可引起山羊、绵羊和马的脑脊髓丝虫病,对发展中国家的畜牧业构成严重威胁。双芽巴贝斯虫的基因组序列将有助于寻找候选基因,以便在双芽巴贝斯虫和班氏吴策线虫中用作药物靶点。组装的基因组草案约长 90Mb,包含 8974 个基因组支架,G+C 含量为 31.73%。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3be4/7061230/bcda2f5907c5/evaa017f1.jpg

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