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新属,新种,一种通过培养上清液强化培养后分离得到的土壤放线菌。

gen. nov., sp. nov., a soil actinobacterium isolated after enhanced cultivation with culture supernatant.

作者信息

Lopez Marin Marco A, Suman Jachym, Jani Kunal, Ulbrich Pavel, Cajthaml Tomas, Filipova Alena, Pajer Petr, Neumann-Schaal Meina, Strejcek Michal, Uhlik Ondrej

机构信息

University of Chemistry and Technology, Prague. Department of Biochemistry and Microbiology, Technicka 3, 16628 Prague, Czech Republic.

Institute of Microbiology of the Czech Academy of Sciences, Videnska 1083, 14220, Prague, Czech Republic.

出版信息

Int J Syst Evol Microbiol. 2023 Feb;73(1). doi: 10.1099/ijsem.0.005678.

Abstract

An actinobacterial strain, designated A5X3R13, was isolated from a compost soil suspension supplemented with extracellular material from a -culture supernatant. The strain was cultured on tenfold-diluted reasoner's 2A agar. The cells were ovoid-to-rod shaped, non-motile, Gram-stain-positive, oxidase-negative, catalase-positive and had a width of 0.5 µm and a length of 0.8-1.2 µm. The results of both 16S rRNA-based phylogenetic and whole-genome analyses indicate that A5X3R13 forms a distinct lineage within the family (order ). On the basis of the 16S rRNA gene sequence, A5X3R13 was closely related to CC-CFT486 (96.2 %), IR27-S3 (96.2 %), 130 (95.6 %), YIM 730233 (95.5 %), KSL-107 (95.4 %), 9H-4 (95.4 %), Gsoil 161 (95.3 %), and NBRC 14755 (95.2 %). The genome had a length of 4 915 757 bp, and its DNA G+C content was 68.5 mol %. The main fatty acids were 10-methyl C, C, C, C, C and iso-C. The main polar lipids were phosphatidylglycerol, diphosphatidylglycerol, phosphatidylinositol and two unidentified phospholipids. MK-9(H) was the predominant respiratory quinone. The peptidoglycan type was A3γ (A41.1) and contained alanine, glycine, glutamic acid and ll-diaminopimelic acid in a molar ratio of 1.2 : 0.9 : 1.0 : 0.8. On the basis of the results of the phylogenetic and phenotypic analyses and comparisons with other members of the family , strain A5X3R13 is proposed to represent a novel species within a novel genus, for which the name gen. nov., sp. nov. is proposed. The type strain is A5X3R13 (=DSM 112953=NCCB 100840).

摘要

从添加了来自培养上清液的细胞外物质的堆肥土壤悬浮液中分离出一株放线菌菌株,命名为A5X3R13。该菌株在十倍稀释的里氏2A琼脂上培养。细胞呈卵形至杆状,无运动性,革兰氏染色阳性,氧化酶阴性,过氧化氢酶阳性,宽度为0.5 µm,长度为0.8 - 1.2 µm。基于16S rRNA的系统发育分析和全基因组分析结果表明,A5X3R13在(目)科内形成一个独特的谱系。基于16S rRNA基因序列,A5X3R13与CC - CFT486(96.2%)、IR27 - S3(96.2%)、130(95.6%)、YIM 730233(95.5%)、KSL - 107(95.4%)、9H - 4(95.4%)、Gsoil 161(95.3%)和NBRC 14755(95.2%)密切相关。基因组长度为4 915 757 bp,其DNA G + C含量为68.5 mol%。主要脂肪酸为10 - 甲基C、C、C、C、C和异C。主要极性脂为磷脂酰甘油、二磷脂酰甘油、磷脂酰肌醇和两种未鉴定的磷脂。MK - 9(H)是主要的呼吸醌。肽聚糖类型为A3γ(A41.1),含有摩尔比为1.2∶0.9∶1.0∶0.8的丙氨酸、甘氨酸、谷氨酸和ll - 二氨基庚二酸。基于系统发育和表型分析结果以及与科内其他成员的比较,建议菌株A5X3R13代表一个新属内的一个新物种,为此提出新属名 ,新种名 。模式菌株为A5X3R13(=DSM 112953=NCCB 100840)。

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