Qin Tian, Pan Yi-Min, Ren Qiao-Qiao, Liu Yu-Qi, Chen Ling-Yun, Zhang Guo-Xia
NMPA Key Laboratory for Safety Evaluation of Cosmetics, Guangdong Provincial Key Laboratory of Tropical Disease Research, Department of Environmental Health, Southern Medical University, Guangzhou 510515, PR China.
Sichuan Provincial Center for Disease Control and Prevention, No. 6, Zhongxue Road, 9 Wuhou District, Chengdu 610041, PR China.
Int J Syst Evol Microbiol. 2022 Nov;72(11). doi: 10.1099/ijsem.0.005602.
A novel Gram-stain-negative, non-motile, spherical-shaped and facultatively anaerobic bacterial strain, designated as GB24 was isolated from bioaerosols of an E-waste dismantling site in Guiyu, Guangdong Province, South PR China. Growth occurred at 15-40 °C (optimum 37 °C), pH 5.5-9.5 (optimum 7.0), and up to 0.5 % NaCl (w/v) under aerobic conditions, GB24 was characterized taxonomically and phylogenetically. The sole isoprenoid quinone detected was ubiquinone-10 (Q-10). The polar lipids consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, three unidentified glycolipids, one unidentified phospholipid, and one unidentified aminolipid. Carotenoid pigments were produced. The major cellular fatty acids (> 10 % of total fatty acids) were Cω6 (51.5 %) and summed feature 8 (13.5 %, comprising Cω7 and/or Cω6). Phylogenetic analysis based on 16S rRNA gene sequence and draft genome grouped strain GB24 into the genus . GB24 was most closely related to DB1506 with 97.5 % 16S rRNA gene sequence similarity. The draft genome of GB24 comprised 6 153 170 bp with a DNA G+C content of 71.5 %. The average nucleotide identity (ANI) and DNA-DNA hybridization (isDDH) values between GB24 and DB1506 were 83.2 % (Ortho ANI), 83.3 % [ANI by blast (ANIb)] and 27.0 %, respectively. Further genomic analysis of GB24 revealed the secondary metabolite clusters of terpene and phosphonate, which indicate the capacity for malleobactin (14 %) and phosphinothricin (6 %) tripeptide production. On the basis of the genotypic, chemotaxonomic and phenotypic results, GB24 represents a novel species, for which the name sp. nov. is proposed. The type strain of is GB24 (= GDMCC 1.2169 = JCM 34449).
从中国广东省贵屿一个电子垃圾拆解场的生物气溶胶中分离出一株新型革兰氏阴性、无运动性、球形且兼性厌氧的细菌菌株,命名为GB24。在有氧条件下,该菌株在15 - 40 °C(最适温度37 °C)、pH 5.5 - 9.5(最适pH 7.0)以及高达0.5%(w/v)NaCl的环境中生长,并对其进行了分类学和系统发育分析。检测到的唯一类异戊二烯醌为泛醌-10(Q-10)。极性脂质由双磷脂酰甘油、磷脂酰甘油、磷脂酰乙醇胺、磷脂酰胆碱、三种未鉴定的糖脂、一种未鉴定的磷脂和一种未鉴定的氨基脂质组成。该菌株能产生类胡萝卜素色素。主要细胞脂肪酸(占总脂肪酸的>10%)为Cω6(51.5%)和总和特征8(13.5%,包括Cω7和/或Cω6)。基于16S rRNA基因序列和草图基因组的系统发育分析将菌株GB24归入该属。GB24与DB1506的16S rRNA基因序列相似度为97.5%,关系最为密切。GB24的草图基因组由6153170 bp组成,DNA G+C含量为71.5%。GB24与DB1506之间的平均核苷酸同一性(ANI)和DNA - DNA杂交(isDDH)值分别为83.2%(Ortho ANI)、83.3%[通过blast计算的ANI(ANIb)]和27.0%。对GB24的进一步基因组分析揭示了萜烯和膦酸盐的次生代谢物簇,这表明其具有产生麦芽菌素(14%)和草丁膦(6%)三肽的能力。基于基因型、化学分类学和表型结果,GB24代表一个新物种,为此提出新物种名称sp. nov.。的模式菌株为GB24(= GDMCC 1.2169 = JCM 34449)。