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黄杆菌属海洋新种,从沿海潮间带沙滩沉积物中分离得到。

Marinobacter albus sp. nov., Isolated from Sand Sediment in a Coastal Intertidal Zone.

机构信息

College of Life Sciences and Medicine, Zhejiang Sci-Tech University, Hangzhou, 310018, People's Republic of China.

Zhejiang Sci-Tech University Shaoxing Academy of Biomedicine Co., Ltd., Shaoxing, 312369, People's Republic of China.

出版信息

Curr Microbiol. 2024 Apr 12;81(6):138. doi: 10.1007/s00284-024-03676-y.

Abstract

A Gram-stain-negative bacterium with a rod-to-ovoid shape, named strain M216, was isolated from sand sediment from the coastal intertidal zone of Huludao, Liaoning Province, China. Growth was observed at 8-40 °C (optimal, 30 °C), pH 5.5-9.5 (optimal, pH 6.5) and 0.5-14.0% (w/v) NaCl (optimal, 6%). Strain M216 possessed ubiquinone-9 as its sole respiratory quinone and phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol, one unidentified aminophosphoglycolipid, one unidentified aminophospholipid, two unidentified phosphoglycolipids, three unidentified phospholipids and three unidentified glycolipids as the main polar lipids. C, C, C 3-OH, C ω9c, C ω9c and summed features 3 (C ω7c and/or C ω6c) were the major fatty acids (> 5%). The 16S rRNA gene sequence of strain M216 exhibited high similarity to those of 'Marinobacter arenosus' CAU 1620 and Marinobacter adhaerens HP15 (99.3% and 98.5%, respectively) and less than 98.5% similarity to those of the other type strains. The ANI and dDDH values between the strain M216 and 'Marinobacter arenosus' CAU 1620 were 87.4% and 33.3%, respectively; these values were the highest among the other type strains but lower than the species threshold. The G+C content of strain M216 was 58.3%. Genomic analysis revealed that strain M216 harbors the major CAZymes of GH13, GH23, GH73, and PL5, which are responsible for polysaccharide degradation and the potential ability to reduce nitrate to ammonia. Through phenotypic, genotypic, and chemotaxonomic analyses, we proposed the name Marinobacter albus sp. nov., a novel species in the genus Marinobacter, with its type strain M216 (= MCCC 1K08600 = KCTC 82894).

摘要

一株革兰氏阴性菌,形状为杆状到卵形,命名为 M216 菌株,从中国辽宁省葫芦岛沿海潮间带的沙沉积物中分离得到。该菌在 8-40°C(最佳温度为 30°C)、pH5.5-9.5(最佳 pH 值为 6.5)和 0.5-14.0%(w/v)NaCl(最佳浓度为 6%)下生长。M216 菌株的唯一呼吸醌是泛醌-9,主要极性脂为磷脂酰乙醇胺、双磷脂酰甘油、磷脂酰甘油、一种未鉴定的氨基糖脂、一种未鉴定的氨基磷脂、两种未鉴定的磷酸甘油酯、三种未鉴定的磷脂和三种未鉴定的糖脂。C16:0、C16:1ω7c 和/或 C16:1ω6c、C18:1ω7c 和/或 C18:1ω6c、C18:1ω9c、C ω9c 和特征脂肪酸 summed feature 3(C ω7c 和/或 C ω6c)为主要脂肪酸(>5%)。菌株 M216 的 16S rRNA 基因序列与 Marinobacter arenosus CAU 1620 和 Marinobacter adhaerens HP15 的序列相似性最高(分别为 99.3%和 98.5%),与其他模式菌株的相似性低于 98.5%。M216 菌株与 Marinobacter arenosus CAU 1620 的 ANI 和 dDDH 值分别为 87.4%和 33.3%,这两个值在其他模式菌株中是最高的,但低于种的阈值。M216 菌株的 G+C 含量为 58.3%。基因组分析表明,M216 菌株含有 GH13、GH23、GH73 和 PL5 等主要 CAZymes,这些 CAZymes 负责多糖的降解以及潜在的将硝酸盐还原为氨的能力。通过表型、基因型和化学分类分析,我们提出了 Marinobacter albus sp. nov. 的名称,这是 Marinobacter 属中的一个新种,其模式菌株为 M216(=MCCC 1K08600=KCTC 82894)。

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