Pradel Nathalie, Fardeau Marie-Laure, Bunk Boyke, Spröer Cathrin, Boedeker Christian, Wolf Jacqueline, Neumann-Schaal Meina, Pester Michael, Spring Stefan
Aix-Marseille Université, Université du Sud Toulon-Var, CNRS/INSU, IRD, MIO, UM 110, 13288 Marseille, cedex 09, France.
Department Bioinformatics, Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Int J Syst Evol Microbiol. 2023 Feb;73(2). doi: 10.1099/ijsem.0.005691.
A novel sulphur-reducing bacterium was isolated from a pyrite-forming enrichment culture inoculated with sewage sludge from a wastewater treatment plant. Based on phylogenetic data, strain J.5.4.2-T.3.5.2 could be affiliated with the phylum . Among type strains of species with validly published names, the highest 16S rRNA gene sequence identity value was found with ILE-2 (89.2 %). Cells of the new isolate were Gram-negative, non-spore-forming, straight to slightly curved rods with tapered ends. Motility was conferred by lateral flagella. True branching of cells was frequently observed. The strain had a strictly anaerobic, asaccharolytic, fermentative metabolism with peptides and amino acids as preferred substrates. Sulphur was required as an external electron acceptor during fermentative growth and was reduced to sulphide, whereas it was dispensable during syntrophic growth with a species. Major fermentation products were acetate and propionate. The cellular fatty acid composition was dominated by unsaturated and branched fatty acids, especially iso-C. Its major polar lipids were phosphatidylglycerol, phosphatidylethanolamine and distinct unidentified polar lipids. Respiratory lipoquinones were not detected. Based on the obtained data we propose the novel species and genus , represented by the type strain J.5.4.2-T.3.5.2 (=DSM 107166=NBRC 114655) and the novel family fam. nov. to accommodate the genus . In addition, we suggest reclassifying certain members of the into new families to comply with current standards for the classification of higher taxa. Based on phylogenomic data, the novel families e fam. nov., fam. nov., fam. nov., fam. nov. and fam. nov. are proposed.
从接种了来自污水处理厂污泥的黄铁矿形成富集培养物中分离出一种新型的硫还原细菌。基于系统发育数据,菌株J.5.4.2-T.3.5.2可归属于门。在有效发表名称的物种模式菌株中,与ILE-2的16S rRNA基因序列同一性值最高(89.2%)。新分离株的细胞为革兰氏阴性、不产芽孢、直形至稍弯曲的杆状,末端逐渐变细。通过侧生鞭毛运动。经常观察到细胞的真正分支。该菌株具有严格厌氧、不分解糖类、发酵型代谢,以肽和氨基酸作为首选底物。在发酵生长过程中需要硫作为外部电子受体,并被还原为硫化物,而在与某物种的互营生长过程中则不需要。主要发酵产物是乙酸盐和丙酸盐。细胞脂肪酸组成以不饱和脂肪酸和支链脂肪酸为主,尤其是异-C。其主要极性脂是磷脂酰甘油、磷脂酰乙醇胺和一些未鉴定的极性脂。未检测到呼吸性脂醌。基于获得的数据,我们提出了新物种和新属,以模式菌株J.5.4.2-T.3.5.2(=DSM 107166=NBRC 114655)代表新属,并提出新科 fam. nov. 以容纳该属。此外,我们建议将某些成员重新分类到新科中,以符合当前高级分类单元分类的标准。基于系统基因组数据,提出了新科e fam. nov.、 fam. nov.、 fam. nov.、 fam. nov. 和 fam. nov.。