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一种新的基于血液的青少年和年轻成年人表观遗传年龄预测器。

A new blood based epigenetic age predictor for adolescents and young adults.

机构信息

Division of Laboratory Medicine, Department of Forensic Sciences, Oslo University Hospital, Nydalen, P.O. Box 4950, 0424, Oslo, Norway.

Department of Clinical Chemistry, Fimlab Laboratories and Finnish Cardiovascular Research Center-Tampere, Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland.

出版信息

Sci Rep. 2023 Feb 9;13(1):2303. doi: 10.1038/s41598-023-29381-7.

Abstract

Children have special rights for protection compared to adults in our society. However, more than 1/4 of children globally have no documentation of their date of birth. Hence, there is a pressing need to develop biological methods for chronological age prediction, robust to differences in genetics, psychosocial events and physical living conditions. At present, DNA methylation is the most promising biological biomarker applied for age assessment. The human genome contains around 28 million DNA methylation sites, many of which change with age. Several epigenetic clocks accurately predict chronological age using methylation levels at age associated GpG-sites. However, variation in DNA methylation increases with age, and there is no epigenetic clock specifically designed for adolescents and young adults. Here we present a novel age Predictor for Adolescents and Young Adults (PAYA), using 267 CpG methylation sites to assess the chronological age of adolescents and young adults. We compared different preprocessing approaches and investigated the effect on prediction performance of the epigenetic clock. We evaluated performance using an independent validation data set consisting of 18-year-old individuals, where we obtained a median absolute deviation of just below 0.7 years. This tool may be helpful in age assessment of adolescents and young adults. However, there is a need to investigate the robustness of the age predictor across geographical and disease populations as well as environmental effects.

摘要

与成年人相比,儿童在我们的社会中享有特殊的保护权利。然而,全球超过四分之一的儿童没有出生日期的记录。因此,迫切需要开发生物学方法来预测年龄,这种方法需要具有很强的抗遗传学差异、心理社会事件和身体生活条件的能力。目前,DNA 甲基化是应用于年龄评估最有前途的生物学生物标志物。人类基因组包含大约 2800 万个 DNA 甲基化位点,其中许多随着年龄的变化而变化。一些表观遗传时钟使用与年龄相关的 GpG 位点的甲基化水平准确预测年龄。然而,随着年龄的增长,DNA 甲基化的变化增加,并且没有专门为青少年和年轻人设计的表观遗传时钟。在这里,我们提出了一种新的青少年和年轻人年龄预测器(PAYA),使用 267 个 CpG 甲基化位点来评估青少年和年轻人的年龄。我们比较了不同的预处理方法,并研究了表观遗传时钟对预测性能的影响。我们使用由 18 岁个体组成的独立验证数据集来评估性能,在该数据集中,我们获得了接近 0.7 岁的中位数绝对偏差。该工具可能有助于青少年和年轻人的年龄评估。然而,需要研究年龄预测器在地理和疾病人群以及环境影响方面的稳健性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5664/9911637/62a0c9968e33/41598_2023_29381_Fig1_HTML.jpg

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