Plant Breeding and Acclimatization Institute-National Research Institute, Radzików, 05-870 Błonie, Poland.
Int J Mol Sci. 2023 Jan 21;24(3):2162. doi: 10.3390/ijms24032162.
Despite intensive optimization efforts, developing an efficient sequence-specific CRISPR/Cas-mediated genome editing method remains a challenge, especially in polyploid cereal species such as wheat. Validating the efficacy of nuclease constructs prior to using them in planta is, thus, a major step of every editing experiment. Several construct evaluation strategies were proposed, with PEG-mediated plasmid transfection of seedling-derived protoplasts becoming the most popular. However, the usefulness of this approach is affected by associated construct copy number bias and chromatin relaxation, both influencing the outcome. Therefore, to achieve a reliable evaluation of CRISPR/Cas9 constructs, we proposed a system based on an -mediated transformation of established wheat cell suspension cultures. This system was used for the evaluation of a CRISPR/Cas9 construct designed to target the gene. The efficiency of editing was verified by cost-effective means of Sanger sequencing and bioinformatic analysis. We discuss advantages and potential future developments of this method in contrast to other in vitro approaches.
尽管进行了密集的优化努力,但开发一种有效的序列特异性 CRISPR/Cas 介导的基因组编辑方法仍然是一个挑战,特别是在多倍体谷类作物如小麦中。因此,在将核酶构建体用于体内之前验证其功效是每个编辑实验的主要步骤。已经提出了几种构建体评估策略,其中 PEG 介导的幼苗衍生原生质体的质粒转染成为最受欢迎的方法。然而,这种方法的有效性受到相关构建体拷贝数偏差和染色质松弛的影响,这两者都会影响结果。因此,为了可靠地评估 CRISPR/Cas9 构建体,我们提出了一种基于已建立的小麦细胞悬浮培养物的介导转化的系统。该系统用于评估针对基因的 CRISPR/Cas9 构建体。通过成本效益高的 Sanger 测序和生物信息学分析验证了编辑效率。我们讨论了与其他体外方法相比,该方法的优势和潜在的未来发展。