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没完没了的故事?通过奥密克戎BQ.1、BQ.1.1、XBB和XBB.1变体的生物合成吉布斯自由能和抗原受体结合来监测新冠病毒的进化

Never ending story? Evolution of SARS-CoV-2 monitored through Gibbs energies of biosynthesis and antigen-receptor binding of Omicron BQ.1, BQ.1.1, XBB and XBB.1 variants.

作者信息

Popovic Marko

机构信息

School of Life Sciences, Technical University of Munich, Freising, Germany.

出版信息

Microb Risk Anal. 2023 Apr;23:100250. doi: 10.1016/j.mran.2023.100250. Epub 2023 Feb 3.

DOI:10.1016/j.mran.2023.100250
PMID:36777740
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9896887/
Abstract

RNA viruses exhibit a great tendency to mutate. Mutations occur in the parts of the genome that encode the spike glycoprotein and less often in the rest of the genome. This is why Gibbs energy of binding changes more than that of biosynthesis. Starting from 2019, the wild type that was labeled Hu-1 has during the last 3 years evolved to produce several dozen new variants, as a consequence of mutations. Mutations cause changes in empirical formulas of new virus strains, which lead to change in thermodynamic properties of biosynthesis and binding. These changes cause changes in the rate of reactions of binding of virus antigen to the host cell receptor and the rate of virus multiplication in the host cell. Changes in thermodynamic and kinetic parameters lead to changes in biological parameters of infectivity and pathogenicity. Since the beginning of the COVID-19 pandemic, SARS-CoV-2 has been evolving towards increase in infectivity and maintaining constant pathogenicity, or for some variants a slight decrease in pathogenicity. In the case of Omicron BQ.1, BQ.1.1, XBB and XBB.1 variants pathogenicity is identical as in the Omicron BA.2.75 variant. On the other hand, infectivity of the Omicron BQ.1, BQ.1.1, XBB and XBB.1 variants is greater than those of previous variants. This will most likely result in the phenomenon of asymmetric coinfection, that is circulation of several variants in the population, some being dominant.

摘要

RNA病毒具有很强的变异倾向。变异发生在基因组中编码刺突糖蛋白的部分,而在基因组的其他部分发生的频率较低。这就是为什么结合吉布斯自由能的变化比生物合成的变化更大。从2019年开始,被标记为Hu-1的野生型在过去3年中由于变异进化产生了几十种新的变体。变异导致新病毒株的经验式发生变化,进而导致生物合成和结合的热力学性质发生变化。这些变化导致病毒抗原与宿主细胞受体结合反应的速率以及病毒在宿主细胞中的增殖速率发生变化。热力学和动力学参数的变化导致感染性和致病性等生物学参数发生变化。自新冠疫情开始以来,SARS-CoV-2一直在朝着提高感染性和保持致病性不变的方向进化,或者对于一些变体来说致病性略有下降。就奥密克戎BQ.1、BQ.1.1、XBB和XBB.1变体而言,其致病性与奥密克戎BA.2.75变体相同。另一方面,奥密克戎BQ.1、BQ.1.1、XBB和XBB.1变体的感染性大于先前的变体。这很可能会导致不对称共感染现象,即几种变体在人群中传播,其中一些占主导地位。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/470c/9896887/0818840e02f2/gr2_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/470c/9896887/752a3c84e725/ga1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/470c/9896887/5b9ab8dbd629/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/470c/9896887/0818840e02f2/gr2_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/470c/9896887/752a3c84e725/ga1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/470c/9896887/5b9ab8dbd629/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/470c/9896887/0818840e02f2/gr2_lrg.jpg

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