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通过环介导等温扩增 PCR 方法使用最少的设备高效检测非洲猪瘟病毒。

Efficient detection of African Swine Fever Virus using minimal equipment through a LAMP PCR method.

机构信息

Veterinary Diagnostic Laboratory, College of Veterinary Medicine, University of Illinois at Urbana-Champaign, Urbana, IL, United States.

WOAH Reference Laboratory for Classical Swine Fever, IRTA-CReSA, Barcelona, Spain.

出版信息

Front Cell Infect Microbiol. 2023 Jan 27;13:1114772. doi: 10.3389/fcimb.2023.1114772. eCollection 2023.

Abstract

African swine fever virus (ASFV) currently represents the biggest threat to the porcine industry worldwide, with high economic impact and severe animal health and welfare concerns. Outbreaks have occurred in Europe and Asia since ASFV was reintroduced into the continent in 2007 and, in 2021, ASFV was detected in the Caribbean, raising alarm about the reemergence of the virus in the Americas. Given the lack of vaccines against ASFV, control of the virus relies on molecular surveillance, which can be delayed due to the need for sample shipment to specialized laboratories. Isothermal PCR techniques, such as LAMP, have become increasingly attractive as point-of-care diagnostic tools given the minimal material expense, equipment, and training required. The present study aimed to develop a LAMP assay for the detection of ASFV. Four LAMP primer sets were designed, based on a consensus sequence for the ASFV p72 gene, and were tested using a synthetic plasmid containing the cloned ASFV p72 target gene as a positive control. Two primer sets, were selected for further validation, given their very short time for amplification. Both primer sets showed thermal stability, amplifying the ASFV DNA at temperatures between 60-70°C and proved to have an analytical limit of detection as low as one ASFV-plasmid DNA copy/µL, using both fluorometric and colorimetric methods. The selected primers did not yield false positive or cross reactive results with other common swine pathogens, showing high specificity. Testing of DNA-spiked samples showed that LAMP amplification was not affected by the nature of the matrices, including oral fluids, tonsils, blood, or rectal swabs. The primer sets were able to detect the two more prevalent ASFV genotypes in the field. Taken together, the results show that ASFV-LAMP-BG2 and ASFV-LAMP-BG3 would be a useful tool for rapid, highly sensitive on-site diagnostic testing.

摘要

非洲猪瘟病毒(ASFV)目前是全球养猪业面临的最大威胁,对经济造成重大影响,对动物健康和福利也产生严重影响。自 2007 年该病毒再次传入欧洲和亚洲以来,这些地区爆发了疫情,而在 2021 年,ASFV 在加勒比地区被检测到,这引发了人们对该病毒在美洲重新出现的担忧。由于缺乏针对 ASFV 的疫苗,病毒的控制依赖于分子监测,但由于需要将样本运送到专门的实验室,这可能会导致监测延迟。等温 PCR 技术,如 LAMP,由于所需的材料费用、设备和培训较少,已成为越来越有吸引力的即时诊断工具。本研究旨在开发一种用于检测 ASFV 的 LAMP 检测方法。根据 ASFV p72 基因的保守序列设计了 4 个 LAMP 引物组,并使用含有克隆 ASFV p72 靶基因的合成质粒作为阳性对照进行了测试。由于扩增时间非常短,选择了两个引物组进行进一步验证。这两个引物组均表现出热稳定性,可在 60-70°C 的温度下扩增 ASFV DNA,并通过荧光和比色法证明具有低至 1 个 ASFV 质粒 DNA 拷贝/µL 的分析检测限。所选引物与其他常见的猪病原体无假阳性或交叉反应结果,具有很高的特异性。对 DNA 加标样本的测试表明,LAMP 扩增不受基质性质的影响,包括口腔液、扁桃体、血液或直肠拭子。该引物组能够检测到田间更常见的两种 ASFV 基因型。总的来说,结果表明 ASFV-LAMP-BG2 和 ASFV-LAMP-BG3 将是一种快速、高度敏感的现场诊断检测的有用工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a0a1/9911463/2d38da48a22a/fcimb-13-1114772-g001.jpg

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