Biodiversity Research Centre, University of British Columbia, Vancouver, British Columbia, Canada.
Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada.
Mol Ecol. 2024 Jan;33(1):e16862. doi: 10.1111/mec.16862. Epub 2023 Feb 14.
Different host species associate with distinct gut microbes in mammals, a pattern sometimes referred to as phylosymbiosis. However, the processes shaping this host specificity are not well understood. One model proposes that barriers to microbial transmission promote specificity by limiting microbial dispersal between hosts. This model predicts that specificity levels measured across microbes is correlated to transmission mode (vertical vs. horizontal) and individual dispersal traits. Here, we leverage two large publicly available gut microbiota data sets (1490 samples from 195 host species) to test this prediction. We found that host specificity varies widely across bacteria (i.e., there are generalist and specialist bacteria) and depends on transmission mode and dispersal ability. Horizontally-like transmitted bacteria equipped with traits that facilitate switches between host (e.g., tolerance to oxygen) were found to be less specific (more generalist) than microbes without those traits, for example, vertically-like inherited bacteria that are intolerant to oxygen. Altogether, our findings are compatible with a model in which limited microbial dispersal abilities foster host specificity.
不同的宿主物种与哺乳动物肠道中的特定微生物相关联,这种模式有时被称为系统共生。然而,塑造这种宿主特异性的过程还没有得到很好的理解。一种模型提出,微生物传播的障碍通过限制微生物在宿主之间的扩散,从而促进了特异性。该模型预测,跨微生物测量的特异性水平与传播模式(垂直与水平)和个体扩散特征相关。在这里,我们利用两个大型公开的肠道微生物组数据集(来自 195 个宿主物种的 1490 个样本)来验证这一预测。我们发现,宿主特异性在细菌之间差异很大(即,存在普遍存在的细菌和专门的细菌),并且取决于传播模式和扩散能力。具有促进在宿主之间切换的特征(例如,对氧气的耐受性)的类似于水平传播的细菌比没有这些特征的微生物更不具有特异性(更普遍),例如,不能耐受氧气的垂直传播继承细菌。总之,我们的研究结果与一个模型一致,即有限的微生物扩散能力促进了宿主特异性。
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