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Metabolic pathways associated with Firmicutes prevalence in the gut of multiple livestock animals and humans.

作者信息

Dias Beatriz do Carmo, Lamarca Alessandra Pavan, Machado Douglas Terra, Kloh Vinicius Prata, de Carvalho Fabíola Marques, Vasconcelos Ana Tereza Ribeiro

机构信息

Laboratório de Bioinformática, Laboratório Nacional de Computação Científica, Petrópolis, Brazil.

Laboratório de Bioinformática e Evolução Molecular, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.

出版信息

Anim Microbiome. 2025 Mar 3;7(1):20. doi: 10.1186/s42523-025-00379-y.


DOI:10.1186/s42523-025-00379-y
PMID:40033444
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11874851/
Abstract

Dynamic interspecific interactions and environmental factors deeply impact the composition of microbiotic communities in the gut. These factors intertwined with the host's genetic background and social habits cooperate synergistically as a hidden force modulating the host's physiological and health determinants, with certain bacterial species being maintained from generation to generation. Firmicutes, one of the dominant bacterial phyla present across vertebrate classes, exhibits a wide range of functional capabilities and colonization strategies. While ecological scenarios involving microbial specialization and metabolic functions have been hypothesized, the specific mechanisms that sustain the persistence of its microbial taxa in a high diversity of hosts remain elusive. This study fills this gap by investigating the Firmicutes metabolic mechanisms contributing to their prevalence and heritability in the host gut on metagenomes-assembled bacterial genomes collected from 351 vertebrate samples, covering 18 food-producing animals and humans, specific breeds and closely-related species. We observed that taxa belonging to Acetivibrionaceae, Clostridiaceae, Lachnospiraceae, Ruminococcaceae, and the not well understood CAG-74 family were evolutionarily shared across all hosts. These prevalent taxa exhibit metabolic pathways significantly correlated with extra-host survival mechanisms, cell adhesion, colonization and host transmission, highlighted by sporulation, glycan biosynthesis, bile acid metabolism, and short-chain fatty acid encoded genes. Our findings provide a deeper understanding of the ecological foundations governing distinct transmission modes, effective colonization establishment, and maintenance of Firmicutes, offering new perspectives on both well-known and poorly characterized species.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/face/11874851/8b4bd20e491e/42523_2025_379_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/face/11874851/48830e067be9/42523_2025_379_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/face/11874851/e37c738223af/42523_2025_379_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/face/11874851/03a07c75cd2a/42523_2025_379_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/face/11874851/1c5f055d0d95/42523_2025_379_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/face/11874851/8d6c0f59bf2b/42523_2025_379_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/face/11874851/0d8bef47055a/42523_2025_379_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/face/11874851/8b4bd20e491e/42523_2025_379_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/face/11874851/48830e067be9/42523_2025_379_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/face/11874851/e37c738223af/42523_2025_379_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/face/11874851/03a07c75cd2a/42523_2025_379_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/face/11874851/1c5f055d0d95/42523_2025_379_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/face/11874851/8d6c0f59bf2b/42523_2025_379_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/face/11874851/0d8bef47055a/42523_2025_379_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/face/11874851/8b4bd20e491e/42523_2025_379_Fig7_HTML.jpg

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引用本文的文献

[1]
The Effects of Dietary Glycerol Fatty Acid Esters on the Production Performance, Serum Biochemistry, and Rumen Microbial Community of Crossbred Simmental Bulls.

Animals (Basel). 2025-7-25

[2]
Seasonal and Environmental Influences on the Gut Microbiota of South China Tigers ().

Animals (Basel). 2025-5-19

本文引用的文献

[1]
Uncovering new species in vertebrate hosts through metagenome-assembled genomes with potential for sporulation.

Microbiol Spectr. 2024-11-5

[2]
Effect of anaerobic digestion on pathogens and antimicrobial resistance in the sewage sludge.

Environ Int. 2024-9

[3]
Multi-Omics Analysis Reveals Dietary Fiber's Impact on Growth, Slaughter Performance, and Gut Microbiome in Durco × Bamei Crossbred Pig.

Microorganisms. 2024-8-14

[4]
Rumen microbiome-driven insight into bile acid metabolism and host metabolic regulation.

ISME J. 2024-1-8

[5]
Effects of bile acid metabolism on intestinal health of livestock and poultry.

J Anim Physiol Anim Nutr (Berl). 2024-9

[6]
Alterations in the gut microbiota and its metabolites contribute to metabolic maladaptation in dairy cows during the development of hyperketonemia.

mSystems. 2024-4-16

[7]
Composition and evolutionary characterization of the gut microbiota in pigs.

Int Microbiol. 2024-8

[8]
Revealing the developmental characterization of rumen microbiome and its host in newly received cattle during receiving period contributes to formulating precise nutritional strategies.

Microbiome. 2023-11-3

[9]
Disentangling the mechanisms underlying phylosymbiosis in mammals.

Mol Ecol. 2024-1

[10]
Four functional profiles for fibre and mucin metabolism in the human gut microbiome.

Microbiome. 2023-10-20

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