Gray T M, Matthews B W
Institute of Molecular Biology, University of Oregon, Eugene 97403.
J Biol Chem. 1987 Dec 15;262(35):16858-64. doi: 10.2210/pdb1l16/pdb.
The structure of the mutant of bacteriophage T4 lysozyme in which Gly-156 is replaced by aspartic acid is described. The lysozyme was isolated by screening for temperature-sensitive mutants and has a melting temperature at pH 6.5 that is 6.1 degrees C lower than wild type. The mutant structure is destabilized, in part, because Gly-156 has conformational angles (phi, psi) that are not optimal for a residue with a beta-carbon. High resolution crystallographic refinement of the mutant structure (R = 17.7% at 1.7 A resolution) shows that the Gly----Asp substitution does not significantly alter the configurational angles (phi, psi) but forces the backbone to move, as a whole, approximately 0.6 A away from its position in wild-type lysozyme. This induced strain weakens a hydrogen bond network that exists in the wild-type structure and also contributes to the reduced stability of the mutant lysozyme. The introduction of an acidic side chain reduces the overall charge on the molecule and thereby tends to increase the stability of the mutant structure relative to wild type. However, at neutral pH this generalized electrostatic stabilization is offset by specific electrostatic repulsion between Asp-156 and Asp-92. The activity of the mutant lysozyme is approximately 50% that of wild-type lysozyme. This reduction in activity might be due to introduction of a negative charge and/or perturbation of the surface of the molecule in the region that is assumed to interact with peptidoglycan substrates.
描述了噬菌体T4溶菌酶中甘氨酸-156被天冬氨酸取代的突变体结构。通过筛选温度敏感突变体分离出该溶菌酶,其在pH 6.5时的解链温度比野生型低6.1摄氏度。突变体结构不稳定,部分原因是甘氨酸-156的构象角(φ,ψ)对于具有β-碳的残基而言并非最佳。突变体结构的高分辨率晶体学精修(在1.7 Å分辨率下R = 17.7%)表明,甘氨酸→天冬氨酸取代并未显著改变构象角(φ,ψ),但迫使主链整体移动,相对于野生型溶菌酶中的位置移动了约0.6 Å。这种诱导应变削弱了野生型结构中存在的氢键网络,也导致突变体溶菌酶稳定性降低。引入酸性侧链降低了分子的总电荷,从而相对于野生型倾向于增加突变体结构的稳定性。然而,在中性pH下,这种普遍的静电稳定作用被天冬氨酸-156和天冬氨酸-92之间的特定静电排斥所抵消。突变体溶菌酶的活性约为野生型溶菌酶的50%。活性降低可能是由于引入负电荷和/或假定与肽聚糖底物相互作用的分子区域表面受到扰动。