Dao-Pin S, Baase W A, Matthews B W
Institute of Molecular Biology, University of Oregon, Eugene 97403.
Proteins. 1990;7(2):198-204. doi: 10.1002/prot.340070208.
An attempt has been made to identify residues in T4 phage lysozyme that may have strained conformations and, by appropriate site-directed replacements, to reduce this strain and thus increase the thermostability of the protein. Valine 131, within alpha-helix 126-134, was identified as a potential candidate. Its side-chain rotational angle, chi 1, differs by approximately 18 degrees from the low-energy trans configuration. In addition, it is largely solvent exposed, yet is held in a rigid conformation. The mutant protein with Val 131 replaced by alanine was constructed and found to have a melting temperature 0.9 degrees C higher than that of wild-type lysozyme at pH 2.8. As a control, the mutant Val 131----Thr was also constructed and its melting temperature was found to be marginally lower than wild type. High-resolution crystal structure determinations of the mutant lysozymes show that their structures are virtually identical with that of wild-type lysozyme, except for the Val----Ala or Val----Thr replacement. Analysis of the different structures suggests that the design of the Val----Ala substitution was, in principle, successful, although the apparent gain in stability caused by reduction in strain is modest and is somewhat offset by the loss of hydrophobic interactions and by entropic effects. The results also help to provide a structural rationalization for the experimental and empirical observations that alanine has a higher helix propensity than valine or threonine.
人们试图确定T4噬菌体溶菌酶中可能具有应变构象的残基,并通过适当的定点置换来降低这种应变,从而提高蛋白质的热稳定性。位于α-螺旋126 - 134内的缬氨酸131被确定为一个潜在的候选残基。它的侧链旋转角χ1与低能反式构象相差约18度。此外,它在很大程度上暴露于溶剂中,但却保持着刚性构象。构建了缬氨酸131被丙氨酸取代的突变蛋白,发现在pH 2.8时其解链温度比野生型溶菌酶高0.9摄氏度。作为对照,还构建了缬氨酸131突变为苏氨酸的突变体,发现其解链温度略低于野生型。对突变型溶菌酶的高分辨率晶体结构测定表明,除了缬氨酸被丙氨酸或缬氨酸被苏氨酸取代外,它们的结构与野生型溶菌酶几乎相同。对不同结构的分析表明,缬氨酸被丙氨酸取代的设计原则上是成功的,尽管应变降低导致的稳定性明显增加幅度不大,并且在一定程度上被疏水相互作用的丧失和熵效应所抵消。这些结果也有助于为丙氨酸比缬氨酸或苏氨酸具有更高的螺旋倾向这一实验和经验观察提供结构上的合理解释。