• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于 16S rRNA 序列的网络分析表明,微生物关键分类群有助于海洋氮循环。

Network analysis of 16S rRNA sequences suggests microbial keystone taxa contribute to marine NO cycling.

机构信息

School of Earth & Ocean Sciences, University of Victoria, P.O. Box 1700 Station CSC, Victoria, BC, V8W 2Y2, Canada.

Department of Biology, University of Victoria, P.O. Box 1700 CSC, Victoria, BC, V8W 2Y2, Canada.

出版信息

Commun Biol. 2023 Feb 23;6(1):212. doi: 10.1038/s42003-023-04597-5.

DOI:10.1038/s42003-023-04597-5
PMID:36823449
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9950131/
Abstract

The mechanisms by which large-scale microbial community function emerges from complex ecological interactions between individual taxa and functional groups remain obscure. We leveraged network analyses of 16S rRNA amplicon sequences obtained over a seven-month timeseries in seasonally anoxic Saanich Inlet (Vancouver Island, Canada) to investigate relationships between microbial community structure and water column NO cycling. Taxa separately broadly into three discrete subnetworks with contrasting environmental distributions. Oxycline subnetworks were structured around keystone aerobic heterotrophs that correlated with nitrification rates and NO supersaturations, linking NO production and accumulation to taxa involved in organic matter remineralization. Keystone taxa implicated in anaerobic carbon, nitrogen, and sulfur cycling in anoxic environments clustered together in a low-oxygen subnetwork that correlated positively with nitrification NO yields and NO production from denitrification. Close coupling between NO producers and consumers in the anoxic basin is indicated by strong correlations between the low-oxygen subnetwork, PICRUSt2-predicted nitrous oxide reductase (nosZ) gene abundances, and NO undersaturation. This study implicates keystone taxa affiliated with common ODZ groups as a potential control on water column NO cycling and provides a theoretical basis for further investigations into marine microbial interaction networks.

摘要

大型微生物群落功能是如何从个体分类群和功能群之间复杂的生态相互作用中产生的,其机制仍不清楚。我们利用在季节性缺氧的萨尼奇湾(加拿大温哥华岛)七个月时间序列中获得的 16S rRNA 扩增子序列的网络分析,研究微生物群落结构与水柱 NO 循环之间的关系。分类群分别广泛分为三个具有不同环境分布的离散子网。氧化层子网围绕关键需氧异养生物构建,这些生物与硝化速率和 NO 过饱和度相关,将 NO 的产生和积累与参与有机物再矿化的分类群联系起来。在缺氧环境中涉及厌氧碳、氮和硫循环的关键类群聚集在一个低氧子网中,该子网与硝化 NO 产率和反硝化产生的 NO 呈正相关。在缺氧盆地中,NO 生产者和消费者之间的紧密耦合由低氧子网、PICRUSt2 预测的氧化亚氮还原酶(nosZ)基因丰度与 NO 不饱和之间的强相关性表明。本研究将与常见海洋贫营养区(ODZ)群体相关的关键类群作为水柱 NO 循环的潜在控制因素,并为进一步研究海洋微生物相互作用网络提供了理论基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/353d/9950131/8bcbcdb0694c/42003_2023_4597_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/353d/9950131/0421b415babc/42003_2023_4597_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/353d/9950131/8193663314d1/42003_2023_4597_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/353d/9950131/f9b90586ff17/42003_2023_4597_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/353d/9950131/173ca5a8c618/42003_2023_4597_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/353d/9950131/081440702f06/42003_2023_4597_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/353d/9950131/8bcbcdb0694c/42003_2023_4597_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/353d/9950131/0421b415babc/42003_2023_4597_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/353d/9950131/8193663314d1/42003_2023_4597_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/353d/9950131/f9b90586ff17/42003_2023_4597_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/353d/9950131/173ca5a8c618/42003_2023_4597_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/353d/9950131/081440702f06/42003_2023_4597_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/353d/9950131/8bcbcdb0694c/42003_2023_4597_Fig6_HTML.jpg

相似文献

1
Network analysis of 16S rRNA sequences suggests microbial keystone taxa contribute to marine NO cycling.基于 16S rRNA 序列的网络分析表明,微生物关键分类群有助于海洋氮循环。
Commun Biol. 2023 Feb 23;6(1):212. doi: 10.1038/s42003-023-04597-5.
2
Nitrous oxide emissions and microbial communities variation in low dissolved oxygen and low carbon-to-nitrogen ratio anoxic-oxic wastewater treatment plant.低溶解氧和低碳氮比缺氧好氧废水处理厂中氧化亚氮排放和微生物群落变化。
Environ Sci Pollut Res Int. 2024 Jun;31(30):42779-42791. doi: 10.1007/s11356-024-33749-1. Epub 2024 Jun 15.
3
Effect of anoxic to aerobic duration ratios on nitrogen removal and nitrous oxide emission in the multiple anoxic/aerobic process.缺氧与好氧时长比对多级缺氧/好氧工艺中氮去除及氧化亚氮排放的影响
Environ Technol. 2019 May;40(13):1676-1685. doi: 10.1080/09593330.2018.1427801. Epub 2018 Jan 31.
4
Counter-diffusion biofilms have lower NO emissions than co-diffusion biofilms during simultaneous nitrification and denitrification: Insights from depth-profile analysis.反扩散生物膜在同步硝化反硝化过程中的 NO 排放量低于共扩散生物膜:来自深度剖面分析的见解。
Water Res. 2017 Nov 1;124:363-371. doi: 10.1016/j.watres.2017.07.058. Epub 2017 Jul 24.
5
Aerobic denitrification as an N2O source from microbial communities.微生物群落中好氧反硝化作为 N2O 的来源。
ISME J. 2024 Jan 8;18(1). doi: 10.1093/ismejo/wrae116.
6
Niche Partitioning of the N Cycling Microbial Community of an Offshore Oxygen Deficient Zone.近海缺氧区氮循环微生物群落的生态位分化
Front Microbiol. 2017 Dec 5;8:2384. doi: 10.3389/fmicb.2017.02384. eCollection 2017.
7
Effect of nitrous oxide (NO) on the structure and function of nitrogen-oxide reducing microbial communities.一氧化二氮(NO)对氮氧化物还原微生物群落结构和功能的影响。
Chemosphere. 2022 Nov;307(Pt 3):135819. doi: 10.1016/j.chemosphere.2022.135819. Epub 2022 Aug 14.
8
Soil biochar amendment shapes the composition of N2O-reducing microbial communities.土壤生物炭改良会影响 N2O 还原微生物群落的组成。
Sci Total Environ. 2016 Aug 15;562:379-390. doi: 10.1016/j.scitotenv.2016.03.220. Epub 2016 Apr 18.
9
Effect of influent C/N ratio on NO emissions from anaerobic/anoxic/oxic biological nitrogen removal processes.进水 C/N 比对厌氧/缺氧/好氧生物脱氮工艺中 NO 排放的影响。
Environ Sci Pollut Res Int. 2017 Oct;24(30):23714-23724. doi: 10.1007/s11356-017-0019-x. Epub 2017 Sep 1.
10
Nitrogen addition stimulates NO emissions via changes in denitrification community composition in a subtropical nitrogen-rich forest.氮添加通过改变亚热带富氮森林的反硝化群落组成来刺激一氧化二氮排放。
J Environ Manage. 2023 Dec 15;348:119274. doi: 10.1016/j.jenvman.2023.119274. Epub 2023 Oct 25.

引用本文的文献

1
Metabolic redundancy and specialisation of novel sulfide-oxidizing Sulfurimonas and Sulfurovum along the brine-seawater interface of the Kebrit Deep.沿凯布里特海渊卤水-海水界面新型硫化物氧化硫单胞菌属和硫卵菌属的代谢冗余与特化
Environ Microbiome. 2025 Feb 5;20(1):19. doi: 10.1186/s40793-025-00669-7.
2
Gene content of seawater microbes is a strong predictor of water chemistry across the Great Barrier Reef.海水微生物的基因组成是整个大堡礁海水化学性质的有力预测指标。
Microbiome. 2025 Jan 16;13(1):11. doi: 10.1186/s40168-024-01972-0.

本文引用的文献

1
Emergent "core communities" of microbes, meiofauna and macrofauna at hydrothermal vents.热液喷口处微生物、小型底栖动物和大型底栖动物的应急“核心群落”
ISME Commun. 2021 Jun 21;1(1):27. doi: 10.1038/s43705-021-00031-1.
2
Oxygen and nitrogen production by an ammonia-oxidizing archaeon.氨氧化古菌产氧和氮。
Science. 2022 Jan 7;375(6576):97-100. doi: 10.1126/science.abe6733. Epub 2022 Jan 6.
3
Verrucomicrobiota are specialist consumers of sulfated methyl pentoses during diatom blooms.硅藻类大量繁殖期间,疣微菌门是硫酸化甲基戊糖的专业消费者。
ISME J. 2022 Mar;16(3):630-641. doi: 10.1038/s41396-021-01105-7. Epub 2021 Sep 7.
4
Investigating the microbial ecology of coastal hotspots of marine nitrogen fixation in the western North Atlantic.调查北大西洋西部海洋固氮热点的沿海微生物生态。
Sci Rep. 2021 Mar 9;11(1):5508. doi: 10.1038/s41598-021-84969-1.
5
Non-denitrifier nitrous oxide reductases dominate marine biomes.非反硝化亚硝酸盐还原酶主导海洋生物群系。
Environ Microbiol Rep. 2020 Dec;12(6):681-692. doi: 10.1111/1758-2229.12879. Epub 2020 Sep 10.
6
Microbial niche differentiation explains nitrite oxidation in marine oxygen minimum zones.微生物小生境分化解释了海洋缺氧区中亚硝酸盐的氧化。
ISME J. 2021 May;15(5):1317-1329. doi: 10.1038/s41396-020-00852-3. Epub 2021 Jan 6.
7
Evidence of Interdomain Ammonium Cross-Feeding From Methylamine- and Glycine Betaine-Degrading to Diatoms as a Widespread Interaction in the Marine Phycosphere.在海洋藻际环境中,作为一种广泛存在的相互作用,从甲基胺和甘氨酸甜菜碱降解菌到硅藻的跨域铵盐交叉供食现象的证据。
Front Microbiol. 2020 Oct 6;11:533894. doi: 10.3389/fmicb.2020.533894. eCollection 2020.
8
PICRUSt2 for prediction of metagenome functions.用于宏基因组功能预测的PICRUSt2
Nat Biotechnol. 2020 Jun;38(6):685-688. doi: 10.1038/s41587-020-0548-6.
9
Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis.16S rRNA 基因测序在微生物组物种和菌株水平分析中的评估。
Nat Commun. 2019 Nov 6;10(1):5029. doi: 10.1038/s41467-019-13036-1.
10
Differential Distribution and Determinants of Ammonia Oxidizing Archaea Sublineages in the Oxygen Minimum Zone off Costa Rica.哥斯达黎加近海氧含量最低区域中氨氧化古菌亚谱系的差异分布及决定因素
Microorganisms. 2019 Oct 15;7(10):453. doi: 10.3390/microorganisms7100453.