Miller Ely F, Neumann Jacob, Chen Ye, Mallela Abhishek, Lin Yen Ting, Hlavacek William S, Posner Richard G
Department of Biological Sciences, Northern Arizona University, Flagstaff, Arizona, United States of America.
Department of Mathematics and Statistics, Northern Arizona University, Flagstaff, Arizona, United States of America.
medRxiv. 2023 Feb 16:2023.02.15.23285971. doi: 10.1101/2023.02.15.23285971.
During an early period of the Coronavirus Disease 2019 (COVID-19) pandemic, the Navajo Nation, much like New York City, experienced a relatively high rate of disease transmission. Yet, between January and October 2020, it experienced only a single period of growth in new COVID-19 cases, which ended when cases peaked in May 2020. The daily number of new cases slowly decayed in the summer of 2020 until late September 2020. In contrast, the surrounding states of Arizona, Colorado, New Mexico, and Utah all experienced at least two periods of growth in the same time frame, with second surges beginning in late May to early June. To investigate the causes of this difference, we used a compartmental model accounting for distinct periods of non-pharmaceutical interventions (NPIs e.g., behaviors that limit disease transmission) to analyze the epidemic in each of the five regions. We used Bayesian inference to estimate region-specific model parameters from regional surveillance data (daily reports of new COVID-19 cases) and to quantify uncertainty in parameter estimates and model predictions. Our results suggest that NPIs in the Navajo Nation were sustained over the period of interest, whereas in the surrounding states, NPIs were relaxed, which allowed for subsequent surges in cases. Our region-specific model parameterizations allow us to quantify the impacts of NPIs on disease incidence in the regions of interest.
在2019冠状病毒病(COVID-19)大流行的早期阶段,纳瓦霍族地区与纽约市类似,经历了相对较高的疾病传播率。然而,在2020年1月至10月期间,该地区仅经历了一段新冠病例增长期,该增长期在2020年5月病例达到峰值时结束。2020年夏季,新增病例的每日数量缓慢下降,直至2020年9月底。相比之下,周边的亚利桑那州、科罗拉多州、新墨西哥州和犹他州在同一时间框架内均至少经历了两个增长期,第二次激增始于5月下旬至6月初。为了探究这种差异的原因,我们使用了一个考虑非药物干预(NPIs,例如限制疾病传播的行为)不同阶段的 compartmental 模型来分析这五个地区各自的疫情。我们使用贝叶斯推理从区域监测数据(新冠病例每日报告)中估计特定区域的模型参数,并量化参数估计和模型预测中的不确定性。我们的结果表明,纳瓦霍族地区的非药物干预在相关期间持续有效,而在周边各州,非药物干预有所放松,这使得随后病例出现激增。我们特定区域的模型参数化使我们能够量化非药物干预对相关地区疾病发病率的影响。