Anhui Province Key Laboratory of Medical Physics and Technology, Institute of Health and Medical Technology, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei 230031, China.
Science Island Branch, Graduate School of University of Science and Technology of China, Hefei 230026, China.
Biomolecules. 2023 Feb 6;13(2):306. doi: 10.3390/biom13020306.
(1) Background: Ovarian cancer (OV) has the high mortality rate among gynecological cancers worldwide. Inefficient early diagnosis and prognostic prediction of OV leads to poor survival in most patients. OV is associated with ferroptosis, an iron-dependent form of cell death. Ferroptosis, believed to be regulated by long non-coding RNAs (lncRNAs), may have potential applications in anti-cancer treatments. In this study, we aimed to identify ferroptosis-related lncRNA signatures and develop a novel model for predicting OV prognosis. (2) Methods: We downloaded data from The Cancer Genome Atlas (TCGA), Genotype-Tissue Expression, and Gene Expression Omnibus (GEO) databases. Prognostic lncRNAs were screened by least absolute shrinkage and selection operator (LASSO)-Cox regression analysis, and a prognostic model was constructed. The model's predictive ability was evaluated by Kaplan-Meier (KM) survival analysis and receiver operating characteristic (ROC) curves. The expression levels of these lncRNAs included in the model were examined in normal and OV cell lines using quantitative reverse transcriptase polymerase chain reaction. (3) Results: We constructed an 18 lncRNA prognostic prediction model for OV based on ferroptosis-related lncRNAs from TCGA patient samples. This model was validated using TCGA and GEO patient samples. KM analysis showed that the prognostic model was able to significantly distinguish between high- and low-risk groups, corresponding to worse and better prognoses. Based on the ROC curves, our model shows stronger prediction precision compared with other traditional clinical factors. Immune cell infiltration, immune checkpoint expression levels, and Tumor Immune Dysfunction and Exclusion analyses are also insightful for OV immunotherapy. (4) Conclusions: The prognostic model constructed in this study has potential for improving our understanding of ferroptosis-related lncRNAs and providing a new tool for prognosis and immune response prediction in patients with OV.
(1)背景:卵巢癌(OV)是全球妇科癌症中死亡率较高的癌症。OV 的早期诊断和预后预测效率低下,导致大多数患者的生存率较差。OV 与铁死亡有关,铁死亡是一种依赖铁的细胞死亡形式。铁死亡被认为受长链非编码 RNA(lncRNA)的调控,可能在抗癌治疗中有潜在应用。在这项研究中,我们旨在鉴定铁死亡相关的 lncRNA 特征,并开发一种新的模型来预测 OV 的预后。(2)方法:我们从癌症基因组图谱(TCGA)、基因型组织表达和基因表达综合数据库(GEO)下载数据。通过最小绝对收缩和选择算子(LASSO)-Cox 回归分析筛选预后 lncRNA,并构建预后模型。通过 Kaplan-Meier(KM)生存分析和接收者操作特征(ROC)曲线评估模型的预测能力。使用定量逆转录聚合酶链反应(qRT-PCR)检测模型中包含的这些 lncRNA 在正常和 OV 细胞系中的表达水平。(3)结果:我们基于 TCGA 患者样本中的铁死亡相关 lncRNA 构建了一个 18 个 lncRNA 的 OV 预后预测模型。该模型在 TCGA 和 GEO 患者样本中得到验证。KM 分析表明,该预后模型能够显著区分高风险和低风险组,分别对应于较差和较好的预后。基于 ROC 曲线,我们的模型与其他传统临床因素相比显示出更强的预测精度。免疫细胞浸润、免疫检查点表达水平以及肿瘤免疫功能障碍和排除分析也为 OV 的免疫治疗提供了有价值的见解。(4)结论:本研究构建的预后模型有助于深入了解铁死亡相关 lncRNA,并为 OV 患者的预后和免疫反应预测提供新的工具。