• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

机器学习检索的前列腺癌中氨基酸代谢相关基因的预后意义

Prognostic Significance of Amino Acid Metabolism-Related Genes in Prostate Cancer Retrieved by Machine Learning.

作者信息

Samaržija Ivana, Trošelj Koraljka Gall, Konjevoda Paško

机构信息

Laboratory for Epigenomics, Division of Molecular Medicine, Ruđer Bošković Institute, 10000 Zagreb, Croatia.

出版信息

Cancers (Basel). 2023 Feb 18;15(4):1309. doi: 10.3390/cancers15041309.

DOI:10.3390/cancers15041309
PMID:36831650
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9954451/
Abstract

Prostate cancer is among the leading cancers according to both incidence and mortality. Due to the high molecular, morphological and clinical heterogeneity, the course of prostate cancer ranges from slow growth that usually does not require immediate therapeutic intervention to aggressive and fatal disease that spreads quickly. However, currently available biomarkers cannot precisely predict the course of a disease, and novel strategies are needed to guide prostate cancer management. Amino acids serve numerous roles in cancers, among which are energy production, building block reservoirs, maintenance of redox homeostasis, epigenetic regulation, immune system modulation and resistance to therapy. In this article, by using The Cancer Genome Atlas (TCGA) data, we found that the expression of amino acid metabolism-related genes is highly aberrant in prostate cancer, which holds potential to be exploited in biomarker design or in treatment strategies. This change in expression is especially evident for catabolism genes and transporters from the solute carrier family. Furthermore, by using recursive partitioning, we confirmed that the Gleason score is strongly prognostic for progression-free survival. However, the expression of the genes (phosphatidylserine and sphingolipids generation) and (hypotaurine generation) can refine prognosis for high and low Gleason scores, respectively. Therefore, our results hold potential for novel prostate cancer progression biomarkers.

摘要

无论在发病率还是死亡率方面,前列腺癌都是主要癌症之一。由于其在分子、形态和临床方面存在高度异质性,前列腺癌的病程差异很大,从通常无需立即进行治疗干预的缓慢生长,到迅速扩散的侵袭性致命疾病。然而,目前可用的生物标志物无法精确预测疾病进程,因此需要新的策略来指导前列腺癌的管理。氨基酸在癌症中发挥着多种作用,包括能量产生、构建物质储备、维持氧化还原稳态、表观遗传调控、免疫系统调节以及对治疗的抗性。在本文中,通过使用癌症基因组图谱(TCGA)数据,我们发现氨基酸代谢相关基因的表达在前列腺癌中高度异常,这在生物标志物设计或治疗策略中具有潜在的应用价值。这种表达变化在分解代谢基因和溶质载体家族的转运蛋白中尤为明显。此外,通过递归划分,我们证实Gleason评分对无进展生存期具有很强的预后价值。然而,基因(磷脂酰丝氨酸和鞘脂生成)和(次牛磺酸生成)的表达分别可以细化高、低Gleason评分的预后。因此,我们的研究结果为新型前列腺癌进展生物标志物提供了潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4443/9954451/b41ecd6325ca/cancers-15-01309-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4443/9954451/ac7bb849718d/cancers-15-01309-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4443/9954451/6d8216e513b6/cancers-15-01309-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4443/9954451/e5711445f184/cancers-15-01309-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4443/9954451/e3a7bcfddfce/cancers-15-01309-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4443/9954451/b41ecd6325ca/cancers-15-01309-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4443/9954451/ac7bb849718d/cancers-15-01309-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4443/9954451/6d8216e513b6/cancers-15-01309-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4443/9954451/e5711445f184/cancers-15-01309-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4443/9954451/e3a7bcfddfce/cancers-15-01309-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4443/9954451/b41ecd6325ca/cancers-15-01309-g005.jpg

相似文献

1
Prognostic Significance of Amino Acid Metabolism-Related Genes in Prostate Cancer Retrieved by Machine Learning.机器学习检索的前列腺癌中氨基酸代谢相关基因的预后意义
Cancers (Basel). 2023 Feb 18;15(4):1309. doi: 10.3390/cancers15041309.
2
More advantages in detecting bone and soft tissue metastases from prostate cancer using F-PSMA PET/CT.使用F-PSMA PET/CT检测前列腺癌骨和软组织转移方面有更多优势。
Hell J Nucl Med. 2019 Jan-Apr;22(1):6-9. doi: 10.1967/s002449910952. Epub 2019 Mar 7.
3
Extracellular Matrix- and Integrin Adhesion Complexes-Related Genes in the Prognosis of Prostate Cancer Patients' Progression-Free Survival.细胞外基质和整合素黏附复合体相关基因在前列腺癌患者无进展生存期预后中的作用
Biomedicines. 2023 Jul 15;11(7):2006. doi: 10.3390/biomedicines11072006.
4
Decreased expression of serine protease inhibitor family G1 (SERPING1) in prostate cancer can help distinguish high-risk prostate cancer and predicts malignant progression.丝氨酸蛋白酶抑制剂家族G1(SERPING1)在前列腺癌中的表达降低有助于区分高危前列腺癌并预测恶性进展。
Urol Oncol. 2018 Aug;36(8):366.e1-366.e9. doi: 10.1016/j.urolonc.2018.05.021. Epub 2018 Jun 19.
5
A Hierarchical Machine Learning Model to Discover Gleason Grade-Specific Biomarkers in Prostate Cancer.一种用于发现前列腺癌中特定Gleason分级生物标志物的分层机器学习模型。
Diagnostics (Basel). 2019 Dec 11;9(4):219. doi: 10.3390/diagnostics9040219.
6
Where is the limit of prostate cancer biomarker research? Systematic investigation of potential prognostic and diagnostic biomarkers.前列腺癌生物标志物研究的极限在哪里?对潜在预后和诊断生物标志物的系统研究。
BMC Urol. 2019 Jun 6;19(1):46. doi: 10.1186/s12894-019-0479-z.
7
Differential Expression of E2F Transcription Factors and Their Functional and Prognostic Roles in Human Prostate Cancer.E2F转录因子在人前列腺癌中的差异表达及其功能和预后作用
Front Cell Dev Biol. 2022 Apr 21;10:831329. doi: 10.3389/fcell.2022.831329. eCollection 2022.
8
Unbiased data mining identifies cell cycle transcripts that predict non-indolent Gleason score 7 prostate cancer.无偏数据挖掘识别出可预测非惰性 Gleason 评分 7 前列腺癌的细胞周期转录本。
BMC Urol. 2019 Jan 7;19(1):4. doi: 10.1186/s12894-018-0433-5.
9
Short-term androgen suppression and radiotherapy versus intermediate-term androgen suppression and radiotherapy, with or without zoledronic acid, in men with locally advanced prostate cancer (TROG 03.04 RADAR): an open-label, randomised, phase 3 factorial trial.局部晚期前列腺癌男性患者中短期雄激素抑制联合放疗与中期雄激素抑制联合放疗、联合或不联合唑来膦酸的比较(TROG 03.04 RADAR):一项开放标签、随机、3 期析因试验。
Lancet Oncol. 2014 Sep;15(10):1076-89. doi: 10.1016/S1470-2045(14)70328-6. Epub 2014 Aug 14.
10
Aberrant Promoter Methylation of Protocadherin8 (PCDH8) in Serum is a Potential Prognostic Marker for Low Gleason Score Prostate Cancer.血清中原钙黏蛋白 8(PCDH8)启动子异常甲基化是低格里森评分前列腺癌的潜在预后标志物。
Med Sci Monit. 2017 Oct 13;23:4895-4900. doi: 10.12659/msm.904366.

引用本文的文献

1
Advances in Prostate Cancer Biomarkers and Probes.前列腺癌生物标志物与探针的进展
Cyborg Bionic Syst. 2024 Jun 27;5:0129. doi: 10.34133/cbsystems.0129. eCollection 2024.
2
Pre-diagnostic circulating metabolomics and prostate cancer risk: A systematic review and meta-analysis.诊断前循环代谢组学与前列腺癌风险:一项系统评价与荟萃分析。
medRxiv. 2025 Feb 28:2025.02.27.25321444. doi: 10.1101/2025.02.27.25321444.
3
Multi-omics integration analysis of the amino-acid metabolism-related genes identifies putatively causal variants of ACCS associated with hepatitis B virus-related hepatocellular carcinoma survival.

本文引用的文献

1
A multifaceted and feasible prognostic model of amino acid metabolism-related genes in the immune response and tumor microenvironment of head and neck squamous cell carcinomas.头颈部鳞状细胞癌免疫反应和肿瘤微环境中氨基酸代谢相关基因的多维度可行预后模型。
Front Oncol. 2022 Oct 7;12:996222. doi: 10.3389/fonc.2022.996222. eCollection 2022.
2
Identification of an amino acid metabolism-associated gene signature predicting the prognosis and immune therapy response of clear cell renal cell carcinoma.一种预测透明细胞肾细胞癌预后和免疫治疗反应的氨基酸代谢相关基因特征的鉴定。
Front Oncol. 2022 Sep 8;12:970208. doi: 10.3389/fonc.2022.970208. eCollection 2022.
3
氨基酸代谢相关基因的多组学整合分析确定了与乙型肝炎病毒相关肝细胞癌生存相关的假定因果变异。
BMC Cancer. 2025 Feb 18;25(1):284. doi: 10.1186/s12885-025-13604-3.
4
Altered amino and fatty acids metabolism in Sudanese prostate cancer patients: insights from metabolic analysis.苏丹前列腺癌患者氨基酸和脂肪酸代谢的改变:代谢分析的见解
J Circ Biomark. 2024 Dec 16;13:36-44. doi: 10.33393/jcb.2024.3146. eCollection 2024 Jan-Dec.
5
Sinonasal adenosquamous carcinomas arising in seromucinous hamartoma or respiratory epithelial adenomatoid hamartoma with atypical features: Report of five detailed clinicopathological and molecular characterisation of rare entity.起源于浆液黏液性错构瘤或具有非典型特征的呼吸上皮性腺瘤样错构瘤的鼻窦腺鳞癌:罕见实体的5例详细临床病理及分子特征报告
Histopathology. 2025 Mar;86(4):585-602. doi: 10.1111/his.15369. Epub 2024 Nov 20.
6
Computational Characterization of Membrane Proteins as Anticancer Targets: Current Challenges and Opportunities.计算膜蛋白作为抗癌靶点的特征:当前的挑战和机遇。
Int J Mol Sci. 2024 Mar 26;25(7):3698. doi: 10.3390/ijms25073698.
7
HuR promotes castration-resistant prostate cancer progression by altering ERK5 activation via posttranscriptional regulation of BCAT1.HuR 通过转录后调控 BCAT1 改变 ERK5 的激活促进去势抵抗性前列腺癌的进展。
J Transl Med. 2024 Feb 18;22(1):178. doi: 10.1186/s12967-024-04970-w.
8
Extracellular Matrix- and Integrin Adhesion Complexes-Related Genes in the Prognosis of Prostate Cancer Patients' Progression-Free Survival.细胞外基质和整合素黏附复合体相关基因在前列腺癌患者无进展生存期预后中的作用
Biomedicines. 2023 Jul 15;11(7):2006. doi: 10.3390/biomedicines11072006.
9
Editorial for the Special Issue on High-Risk Localized and Locally Advanced Prostate Cancer.高危局限性和局部晚期前列腺癌特刊社论
Cancers (Basel). 2023 Jun 11;15(12):3153. doi: 10.3390/cancers15123153.
Alanine-Serine-Cysteine Transporter 2 Inhibition Suppresses Prostate Cancer Cell Growth In Vitro.
丙氨酸-丝氨酸-半胱氨酸转运体2抑制作用可抑制前列腺癌细胞的体外生长。
J Clin Med. 2022 Sep 16;11(18):5466. doi: 10.3390/jcm11185466.
4
GCN2 eIF2 kinase promotes prostate cancer by maintaining amino acid homeostasis.GCN2-eIF2 激酶通过维持氨基酸内稳促进前列腺癌。
Elife. 2022 Sep 15;11:e81083. doi: 10.7554/eLife.81083.
5
Dual contribution of the mTOR pathway and of the metabolism of amino acids in prostate cancer.mTOR 通路和氨基酸代谢在前列腺癌中的双重作用。
Cell Oncol (Dordr). 2022 Oct;45(5):831-859. doi: 10.1007/s13402-022-00706-4. Epub 2022 Aug 29.
6
Gene expression analysis reveals a 5-gene signature for progression-free survival in prostate cancer.基因表达分析揭示了前列腺癌无进展生存期的一个5基因特征。
Front Oncol. 2022 Aug 12;12:914078. doi: 10.3389/fonc.2022.914078. eCollection 2022.
7
Amino acid metabolism genes associated with immunotherapy responses and clinical prognosis of colorectal cancer.与结直肠癌免疫治疗反应及临床预后相关的氨基酸代谢基因。
Front Mol Biosci. 2022 Aug 5;9:955705. doi: 10.3389/fmolb.2022.955705. eCollection 2022.
8
Effect of taurine on the proliferation, apoptosis and / signaling in prostate cancer cells.牛磺酸对前列腺癌细胞增殖、凋亡及/信号传导的影响。
Transl Cancer Res. 2022 Jun;11(6):1705-1712. doi: 10.21037/tcr-22-1297.
9
Metabolic reprogramming as an emerging mechanism of resistance to endocrine therapies in prostate cancer.代谢重编程作为前列腺癌内分泌治疗耐药的一种新机制。
Cancer Drug Resist. 2021 Mar 19;4(1):143-162. doi: 10.20517/cdr.2020.54. eCollection 2021.
10
From Beginning to End: Expanding the SERINC3 Interactome Through an Analysis.从始至终:通过分析扩展SERINC3相互作用组
Bioinform Biol Insights. 2022 Apr 25;16:11779322221092944. doi: 10.1177/11779322221092944. eCollection 2022.