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相分离:高级染色质组织的直接和间接驱动力。

Phase Separation: Direct and Indirect Driving Force for High-Order Chromatin Organization.

机构信息

Division of Cell, Developmental and Integrative Biology, School of Medicine, South China University of Technology, Guangzhou 510006, China.

Department of Cell Biology and Genetics, Core Facility of Developmental Biology, Chongqing Medical University, Chongqing 400016, China.

出版信息

Genes (Basel). 2023 Feb 15;14(2):499. doi: 10.3390/genes14020499.

DOI:10.3390/genes14020499
PMID:36833426
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9956262/
Abstract

The multi-level spatial chromatin organization in the nucleus is closely related to chromatin activity. The mechanism of chromatin organization and remodeling attract much attention. Phase separation describes the biomolecular condensation which is the basis for membraneless compartments in cells. Recent research shows that phase separation is a key aspect to drive high-order chromatin structure and remodeling. In addition, chromatin functional compartmentalization in the nucleus which is formed by phase separation also plays an important role in overall chromatin structure. In this review, we summarized the latest work about the role of phase separation in spatial chromatin organization, focusing on direct and indirect effects of phase separation on 3D chromatin organization and its impact on transcription regulation.

摘要

核内多层次空间染色质组织与染色质活性密切相关。染色质组织和重塑的机制引起了广泛关注。相分离描述了生物分子凝聚,这是细胞中无膜隔室的基础。最近的研究表明,相分离是驱动高级染色质结构和重塑的关键方面。此外,由相分离形成的核内染色质功能区室化也在整体染色质结构中起着重要作用。在这篇综述中,我们总结了关于相分离在空间染色质组织中的作用的最新工作,重点介绍了相分离对 3D 染色质组织的直接和间接影响及其对转录调控的影响。

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本文引用的文献

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The dynamics of three-dimensional chromatin organization and phase separation in cell fate transitions and diseases.细胞命运转变和疾病中三维染色质组织与相分离的动力学
Cell Regen. 2022 Dec 21;11(1):42. doi: 10.1186/s13619-022-00145-4.
2
Loop-extrusion and polymer phase-separation can co-exist at the single-molecule level to shape chromatin folding.环挤出和聚合物相分离可以在单分子水平上共存,从而塑造染色质折叠。
Nat Commun. 2022 Jul 13;13(1):4070. doi: 10.1038/s41467-022-31856-6.
3
CTCF organizes inter-A compartment interactions through RYBP-dependent phase separation.
Epigenetics Chromatin. 2023 Nov 28;16(1):46. doi: 10.1186/s13072-023-00520-8.
CTCF 通过依赖于 RYBP 的相分离来组织 A 隔室之间的相互作用。
Cell Res. 2022 Aug;32(8):744-760. doi: 10.1038/s41422-022-00676-0. Epub 2022 Jun 29.
4
The 3' Pol II pausing at replication-dependent histone genes is regulated by Mediator through Cajal bodies' association with histone locus bodies.复制依赖性组蛋白基因处的 Pol II 3'端暂停由中介体通过 Cajal 体与组蛋白基因座位体的关联来调控。
Nat Commun. 2022 May 25;13(1):2905. doi: 10.1038/s41467-022-30632-w.
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The Physics of DNA Folding: Polymer Models and Phase-Separation.DNA折叠的物理学:聚合物模型与相分离
Polymers (Basel). 2022 May 9;14(9):1918. doi: 10.3390/polym14091918.
6
Long-Distance Repression by Human Silencers: Chromatin Interactions and Phase Separation in Silencers.长距离抑制由人类沉默子介导:沉默子中的染色质相互作用和相分离。
Cells. 2022 May 5;11(9):1560. doi: 10.3390/cells11091560.
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To be or not be (in the LAD): emerging roles of lamin proteins in transcriptional regulation.成为或不成为(在 LAD 中):层粘连蛋白在转录调控中的新兴作用。
Biochem Soc Trans. 2022 Apr 29;50(2):1035-1044. doi: 10.1042/BST20210858.
8
Genome-wide maps of nucleolus interactions reveal distinct layers of repressive chromatin domains.基因组范围内核仁相互作用图谱揭示了不同层次的抑制性染色质域。
Nat Commun. 2022 Mar 18;13(1):1483. doi: 10.1038/s41467-022-29146-2.
9
Control of Chromatin Organization and Chromosome Behavior during the Cell Cycle through Phase Separation.通过相分离控制细胞周期中的染色质组织和染色体行为。
Int J Mol Sci. 2021 Nov 12;22(22):12271. doi: 10.3390/ijms222212271.
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