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对 中 R2R3-MYB 转录因子家族的全基因组鉴定分析揭示了其对干旱胁迫响应的作用机制。

Genome-Wide Identification Analysis of the R2R3-MYB Transcription Factor Family in for Insights into Drought Stress Responses.

机构信息

College of Forestry, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization, College of Landscape Architecture and Art, Fujian Agriculture and Forestry University, Fuzhou 350002, China.

出版信息

Int J Mol Sci. 2023 Feb 6;24(4):3235. doi: 10.3390/ijms24043235.

Abstract

represents a distinctive Orchidaceae plant that is more tolerant than other terrestrial orchids. Studies have shown that many members of the MYB transcription factor (TF) family, especially the R2R3-MYB subfamily, are responsive to drought stress. This study identified 103 ; phylogenetic analysis classified these genes into 22 subgroups with . Structural analysis showed that most genes contained the same motifs, three exons and two introns, and showed a helix-turn-helix 3D structure in each R repeat. However, the members of subgroup 22 contained only one exon and no intron. Collinear analysis revealed that had more orthologous R2R3-MYB genes with wheat than and rice. ratios indicated that most genes were under purifying negative selection pressure. -acting elements analysis revealed that drought-related elements were mainly focused on subgroups 4, 8, 18, 20, 21, and 22, and (S20) contained the most. The transcriptome analysis results showed that expression patterns of most genes were upregulated in leaves in response to slight drought stress and downregulated in roots. Among them, members in S8 and S20 significantly responded to drought stress in . In addition, S14 and S17 also participated in these responses, and nine genes were selected for the real-time reverse transcription quantitative PCR (RT-qPCR) experiment. The results were roughly consistent with the transcriptome. Our results, thus, provide an important contribution to understanding the role of in stress-related metabolic processes.

摘要

代表一种独特的兰科植物,比其他陆生兰花更具耐受性。研究表明,许多 MYB 转录因子(TF)家族成员,特别是 R2R3-MYB 亚家族成员,对干旱胁迫有反应。本研究鉴定了 103 个;系统发育分析将这些基因分为 22 个亚组,具有. 结构分析表明,大多数 基因含有相同的基序,三个外显子和两个内含子,并在每个 R 重复中显示出螺旋-转角-螺旋 3D 结构。然而,亚组 22 的成员仅包含一个外显子且没有内含子。共线性分析表明,与 和 相比, 与小麦有更多的直系同源 R2R3-MYB 基因。 比值表明,大多数 基因受到纯化的负选择压力。-启动子元件分析表明,与干旱相关的元件主要集中在亚组 4、8、18、20、21 和 22,并且 (S20)含有最多的元件。转录组分析结果表明,大多数 基因在叶片中的表达模式在轻度干旱胁迫下上调,在根中下调。其中,S8 和 S20 中的成员在 中对干旱胁迫有显著响应。此外,S14 和 S17 也参与了这些反应,选择了 9 个基因进行实时逆转录定量 PCR(RT-qPCR)实验。结果与转录组大致一致。因此,我们的研究结果为理解 在与应激相关的代谢过程中的作用提供了重要贡献。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b1f2/9959677/966c8ae99019/ijms-24-03235-g001.jpg

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