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动静脉内瘘狭窄中关键基因的鉴定与验证

Identification and Validation of Hub Genes in the Stenosis of Arteriovenous Fistula.

作者信息

Li Yu, Chen Yue, Cui Wenhao, Wang Jukun, Chen Xin, Zhang Chao, Zhu Linzhong, Bian Chunjing, Luo Tao

机构信息

Department of General Surgery, Xuanwu Hospital, Capital Medical University, Beijing 100053, China.

出版信息

J Pers Med. 2023 Jan 25;13(2):207. doi: 10.3390/jpm13020207.

Abstract

Arteriovenous fistula (AVF) is the most widely used hemodialysis vascular access in China. However, stenosis of the AVF limits its use. The mechanism of AVF stenosis is currently unknown. Therefore, the purpose of our study was to explore the mechanisms of AVF stenosis. In this study, we identified the differentially expressed genes (DEGs) based on the Gene Expression Omnibus (GEO) dataset (GSE39488) between venous segments of AVF and normal veins. A protein-protein interaction (PPI) network was constructed to identify hub genes of AVF stenosis. Finally, six hub genes (, , , , , and ) were found. Combined with the results of the PPI network analysis and literature search, and were selected as the target genes for further investigation. We validated the bioinformatic results via reverse transcription PCR (RT-PCR) and Western blot analyses on human and rat samples. The expression levels of the mRNA and protein of and were upregulated in both human and rat samples. In summary, we found that FOS may play an important role in AVF stenosis, which could be a potential therapeutic target of AVF stenosis.

摘要

动静脉内瘘(AVF)是中国应用最广泛的血液透析血管通路。然而,AVF狭窄限制了其使用。目前尚不清楚AVF狭窄的机制。因此,我们研究的目的是探讨AVF狭窄的机制。在本研究中,我们基于基因表达综合数据库(GEO)数据集(GSE39488)确定了AVF静脉段与正常静脉之间的差异表达基因(DEG)。构建了蛋白质-蛋白质相互作用(PPI)网络以识别AVF狭窄的枢纽基因。最后,发现了六个枢纽基因(、、、、、和)。结合PPI网络分析结果和文献检索,选择和作为进一步研究的靶基因。我们通过对人和大鼠样本进行逆转录PCR(RT-PCR)和蛋白质印迹分析验证了生物信息学结果。在人和大鼠样本中,和的mRNA和蛋白质表达水平均上调。总之,我们发现FOS可能在AVF狭窄中起重要作用,这可能是AVF狭窄的潜在治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b594/9962424/9ed0b453aaed/jpm-13-00207-g001.jpg

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